D. rerio Gene: ddit3 - ENSDARG00000059836 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059836
Nameddit3
DescriptionDNA-damage-inducible transcript 3 [Source:ZFIN;Acc:ZDB-GENE-070410-90]
OrganismDanio rerio (zebrafish)
Synonym(s)chop, zgc:162630

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
941
  • 941
96.85
  • 96.85
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.45
  • 92.45
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.46e3
  • 2.46e3
  • 6.16e3
91.77
  • 91.77
  • 79.36
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
2.80e3
  • 2.80e3
  • 3.34e3
  • 1.06e4
  • 1.29e4
  • 1.32e4
90.62
  • 90.62
  • 88.82
  • 64.65
  • 56.81
  • 55.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.85e3
  • 2.85e3
90.44
  • 90.44
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.93e3
  • 2.93e3
  • 9.96e3
90.20
  • 90.20
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.95e3
  • 2.95e3
90.13
  • 90.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.10e3
  • 3.10e3
  • 9.34e3
89.61
  • 89.61
  • 68.74
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.63e3
  • 3.63e3
87.86
  • 87.86
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000104life cycle
3.70e3
  • 3.70e3
  • 1.36e4
  • 1.49e4
87.63
  • 87.63
  • 54.53
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.26
  • 87.26
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
4.93e3
  • 4.93e3
  • 5.86e3
  • 1.12e4
83.48
  • 83.48
  • 80.39
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.23e3
  • 5.23e3
82.49
  • 82.49
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.08e3
  • 6.08e3
79.66
  • 79.66
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.80e3
  • 6.80e3
77.23
  • 77.23
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.85e3
  • 7.85e3
73.71
  • 73.71
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.18e3
  • 8.18e3
72.61
  • 72.61
AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0001708jaw skeleton
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.66
  • 61.66
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.16e4
  • 1.16e4
61.22
  • 61.22
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.17e4
  • 1.17e4
  • 1.27e4
60.87
  • 60.87
  • 57.48
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.30e4
  • 1.30e4
  • 1.56e4
56.41
  • 56.41
  • 47.83
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.82
  • 51.82
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
50.56
  • 50.56
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.53e4
  • 1.53e4
48.78
  • 48.78
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000059836 (ddit3)
ZFINZDB-GENE-070410-90 (ddit3)
EMBLBX950854
Uniprot/SPTREMBLF1Q964, F1Q964_DANRE

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