D. rerio Gene: sdc4 - ENSDARG00000059906 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000059906
Namesdc4
Descriptionsyndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
OrganismDanio rerio (zebrafish)
Synonym(s)sdc4l, syn4, wu:fc47g09

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
274
  • 274
99.09
  • 99.09
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
406
  • 406
  • 522
  • 788
  • 866
  • 1.32e3
98.65
  • 98.65
  • 98.25
  • 97.36
  • 97.10
  • 95.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
407
  • 407
  • 625
  • 699
  • 832
  • 922
  • 922
  • 952
  • 952
  • 1.19e3
  • 1.39e3
  • 1.39e3
  • 1.60e3
  • 1.98e3
  • 2.04e3
  • 1.15e4
  • 1.38e4
  • 1.44e4
98.64
  • 98.64
  • 97.91
  • 97.66
  • 97.22
  • 96.92
  • 96.92
  • 96.82
  • 96.81
  • 96.01
  • 95.36
  • 95.33
  • 94.65
  • 93.37
  • 93.17
  • 61.54
  • 53.74
  • 51.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
466
  • 466
  • 597
  • 705
  • 754
  • 800
  • 1.05e3
98.44
  • 98.44
  • 98.00
  • 97.64
  • 97.48
  • 97.33
  • 96.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
644
  • 644
  • 899
  • 942
  • 1.05e3
  • 1.07e3
  • 1.15e3
  • 1.19e3
  • 1.20e3
  • 1.41e3
  • 1.65e3
97.85
  • 97.85
  • 96.99
  • 96.85
  • 96.49
  • 96.43
  • 96.17
  • 96.03
  • 95.99
  • 95.28
  • 94.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
666
  • 666
97.77
  • 97.77
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
741
  • 741
97.52
  • 97.52
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
813
  • 813
97.28
  • 97.28
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
840
  • 840
  • 1.13e3
97.19
  • 97.19
  • 96.23
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
996
  • 996
  • 8.54e3
  • 1.49e4
96.67
  • 96.67
  • 71.41
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.14e3
  • 1.14e3
96.19
  • 96.19
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.14e3
  • 1.14e3
  • 1.15e3
  • 1.63e3
96.18
  • 96.18
  • 96.16
  • 94.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.15e3
  • 1.15e3
96.16
  • 96.16
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.29e3
  • 1.29e3
  • 1.71e3
95.67
  • 95.67
  • 94.29
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.45e3
  • 1.45e3
95.13
  • 95.13
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.60e3
  • 1.60e3
  • 2.41e3
94.63
  • 94.63
  • 91.93
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.68e3
  • 1.68e3
94.38
  • 94.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.90e3
  • 1.90e3
93.63
  • 93.63
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.04e3
  • 2.04e3
93.19
  • 93.19
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.11e3
  • 2.11e3
92.95
  • 92.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.41e3
  • 2.41e3
91.93
  • 91.93
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.71e3
  • 2.71e3
90.93
  • 90.93
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
90.90
  • 90.90
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.83e3
  • 2.83e3
90.54
  • 90.54
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.91e3
  • 2.91e3
  • 1.50e4
90.27
  • 90.27
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.18e3
  • 3.18e3
89.35
  • 89.35
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.37e3
  • 3.37e3
88.72
  • 88.72
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.43e3
  • 3.43e3
  • 3.73e3
  • 4.30e3
  • 7.11e3
88.52
  • 88.52
  • 87.50
  • 85.60
  • 76.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.46e3
  • 3.46e3
  • 1.36e4
88.42
  • 88.42
  • 54.31
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.71e3
  • 3.71e3
87.58
  • 87.58
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.53e3
  • 6.53e3
78.14
  • 78.14
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.18e4
  • 1.18e4
60.39
  • 60.39
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000029Pharyngula:Prim-5
1.22e4
  • 1.22e4
59.08
  • 59.08
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.98
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000059906 (sdc4)
ZFINZDB-GENE-061111-1 (sdc4)
EMBLAL954861, CU463256
Uniprot/SPTREMBLF6NMW3, F6NMW3_DANRE

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