D. rerio Gene: vcpkmt - ENSDARG00000060021 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060021
Namevcpkmt
Descriptionvalosin containing protein lysine (K) methyltransferase [Source:ZFIN;Acc:ZDB-GENE-060825-19]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7159042, mettl21d, zgc:153596
Orthologs(s)16 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
4.23e3
  • 4.23e3
  • 5.96e3
  • 6.75e3
  • 9.39e3
  • 1.01e4
85.82
  • 85.82
  • 80.04
  • 77.38
  • 68.55
  • 66.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.14e3
  • 5.14e3
82.78
  • 82.78
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.53
  • 82.53
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.70e3
  • 5.70e3
80.92
  • 80.92
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
5.77e3
  • 5.77e3
  • 9.96e3
  • 1.17e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
80.67
  • 80.67
  • 66.65
  • 60.70
  • 59.08
  • 59.08
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.04e3
  • 6.04e3
79.78
  • 79.78
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
6.51e3
  • 6.51e3
  • 7.44e3
78.21
  • 78.21
  • 75.09
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.73e3
  • 6.73e3
77.48
  • 77.48
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.50e3
  • 7.50e3
74.90
  • 74.90
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.80e3
  • 7.80e3
73.88
  • 73.88
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.03e3
  • 8.03e3
  • 1.15e4
73.12
  • 73.12
  • 61.43
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
  • 1.19e4
72.01
  • 72.01
  • 60.16
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
8.88e3
  • 8.88e3
  • 8.90e3
70.27
  • 70.27
  • 70.21
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.13e3
  • 9.13e3
69.43
  • 69.43
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.25e3
  • 9.25e3
69.04
  • 69.04
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.41e3
  • 9.41e3
68.51
  • 68.51
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.60e3
  • 9.60e3
  • 1.16e4
67.87
  • 67.87
  • 61.02
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.51
  • 66.51
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.53
  • 64.53
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.73
  • 58.73
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.58
  • 58.58
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.48
  • 57.48
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.27
  • 57.27
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.17
  • 55.17
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.20
  • 50.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi14 species15 genesCompare expression
Bilateria15 species16 genesCompare expression

Orthology information comes from OMA : ENSDARG00000060021.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060021.

Cross-references

EnsemblENSDARG00000060021 (vcpkmt)
ZFINZDB-GENE-060825-19 (vcpkmt)
EMBLBX088653
Uniprot/SPTREMBLE7F754, E7F754_DANRE, X1WE47, X1WE47_DANRE

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