D. rerio Gene: lrrn1 - ENSDARG00000060115 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060115
Namelrrn1
Descriptionleucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
OrganismDanio rerio (zebrafish)
Orthologs(s)18 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
768
  • 768
  • 769
  • 1.63e3
  • 1.96e3
  • 3.10e3
  • 4.59e3
  • 5.52e3
  • 5.58e3
  • 7.45e3
  • 7.54e3
97.43
  • 97.43
  • 97.43
  • 94.54
  • 93.44
  • 89.62
  • 84.62
  • 81.52
  • 81.33
  • 75.04
  • 74.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
957
  • 957
96.80
  • 96.80
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.39e3
  • 1.39e3
95.37
  • 95.37
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
2.01e3
  • 2.01e3
  • 5.45e3
  • 7.07e3
  • 8.96e3
  • 9.19e3
93.27
  • 93.27
  • 81.76
  • 76.32
  • 69.98
  • 69.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.18e3
  • 2.18e3
  • 5.74e3
92.71
  • 92.71
  • 80.79
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.27e3
  • 2.27e3
  • 4.04e3
92.40
  • 92.40
  • 86.47
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000068embryo stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
3.07e3
  • 3.07e3
  • 5.87e3
  • 5.99e3
  • 8.63e3
  • 1.02e4
  • 1.04e4
  • 1.05e4
  • 1.11e4
  • 1.15e4
  • 1.24e4
  • 1.26e4
  • 1.32e4
  • 1.32e4
  • 1.34e4
  • 1.38e4
  • 1.38e4
  • 1.50e4
89.71
  • 89.71
  • 80.33
  • 79.93
  • 71.09
  • 65.88
  • 65.15
  • 64.81
  • 62.67
  • 61.37
  • 58.63
  • 57.79
  • 55.87
  • 55.86
  • 55.00
  • 53.92
  • 53.85
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
3.73e3
  • 3.73e3
  • 4.27e3
  • 4.27e3
87.50
  • 87.50
  • 85.71
  • 85.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
3.93e3
  • 3.93e3
  • 7.08e3
  • 7.47e3
  • 8.09e3
86.84
  • 86.84
  • 76.30
  • 74.99
  • 72.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.27e3
  • 4.27e3
  • 7.38e3
  • 9.01e3
85.72
  • 85.72
  • 75.28
  • 69.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
4.27e3
  • 4.27e3
  • 4.98e3
  • 1.02e4
  • 1.05e4
  • 1.05e4
85.71
  • 85.71
  • 83.33
  • 65.77
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.48e3
  • 4.48e3
  • 7.83e3
  • 8.22e3
  • 9.07e3
  • 9.71e3
  • 1.02e4
84.99
  • 84.99
  • 73.79
  • 72.48
  • 69.62
  • 67.48
  • 65.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
4.97e3
  • 4.97e3
  • 1.14e4
  • 1.28e4
  • 1.47e4
  • 1.57e4
  • 1.68e4
83.38
  • 83.38
  • 61.87
  • 57.08
  • 50.79
  • 47.50
  • 43.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.17
  • 79.17
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.62e3
  • 6.62e3
77.84
  • 77.84
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
7.97e3
  • 7.97e3
  • 8.40e3
  • 8.54e3
  • 9.25e3
73.32
  • 73.32
  • 71.86
  • 71.42
  • 69.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.22e3
  • 8.22e3
  • 8.22e3
  • 8.54e3
72.48
  • 72.48
  • 72.48
  • 71.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.30e3
  • 8.30e3
  • 8.79e3
  • 8.79e3
72.21
  • 72.21
  • 70.57
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
8.54e3
  • 8.54e3
  • 8.96e3
  • 9.60e3
  • 1.34e4
71.41
  • 71.41
  • 69.99
  • 67.85
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
8.65e3
  • 8.65e3
  • 8.65e3
  • 9.25e3
71.04
  • 71.04
  • 71.04
  • 69.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.79e3
  • 8.79e3
  • 8.79e3
  • 8.79e3
70.57
  • 70.57
  • 70.57
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.64e3
  • 9.64e3
67.72
  • 67.72
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
1.01e4
  • 1.01e4
  • 1.16e4
  • 1.35e4
66.16
  • 66.16
  • 61.28
  • 54.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
1.08e4
  • 1.08e4
63.76
  • 63.76
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
1.10e4
  • 1.10e4
  • 1.17e4
  • 1.34e4
63.32
  • 63.32
  • 60.70
  • 55.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.18e4
  • 1.18e4
  • 1.23e4
60.50
  • 60.50
  • 58.80
AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.22e4
  • 1.22e4
  • 1.22e4
  • 1.22e4
59.08
  • 59.08
  • 59.08
  • 59.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.46
  • 53.46
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.42e4
  • 1.42e4
  • 1.68e4
52.53
  • 52.53
  • 43.65
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.44e4
  • 1.44e4
51.70
  • 51.70
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.31
  • 49.31
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.37
  • 48.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
47.96
  • 47.96
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.47
  • 47.47
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.24
  • 47.24
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.47
  • 46.47
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.41
  • 46.41
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.77
  • 45.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.78
  • 44.78
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.68e4
  • 1.68e4
43.64
  • 43.64
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.68
  • 42.68
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.34
  • 38.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060115.

Cross-references

EnsemblENSDARG00000060115 (lrrn1)
ZFINZDB-GENE-071126-1 (lrrn1)
EMBLBC155656, CU468905
Uniprot/SPTREMBLA9JRH0, A9JRH0_DANRE

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