D. rerio Gene: fam160b1 - ENSDARG00000060168 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060168
Namefam160b1
Descriptionfamily with sequence similarity 160, member B1 [Source:ZFIN;Acc:ZDB-GENE-070424-63]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:162264
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
5.12e3
  • 5.12e3
  • 5.41e3
82.86
  • 82.86
  • 81.89
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.01e3
  • 6.01e3
  • 6.68e3
79.88
  • 79.88
  • 77.63
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.79e3
  • 6.79e3
77.26
  • 77.26
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
7.01e3
  • 7.01e3
76.54
  • 76.54
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.40e3
  • 7.40e3
75.22
  • 75.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.41e3
  • 7.41e3
75.18
  • 75.18
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.52e3
  • 7.52e3
74.84
  • 74.84
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.86
  • 71.86
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.49e3
  • 8.49e3
  • 1.26e4
71.58
  • 71.58
  • 57.93
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
8.84e3
  • 8.84e3
  • 1.04e4
  • 1.04e4
  • 1.09e4
  • 1.37e4
70.41
  • 70.41
  • 65.17
  • 65.07
  • 63.55
  • 54.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.34e3
  • 9.34e3
68.74
  • 68.74
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.65e3
  • 9.65e3
67.68
  • 67.68
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.66e3
  • 9.66e3
67.64
  • 67.64
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.34
  • 66.34
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.95
  • 65.95
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
65.00
  • 65.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.66
  • 63.66
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.71
  • 61.71
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
  • 1.17e4
61.70
  • 61.70
  • 60.79
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.18e4
  • 1.18e4
  • 1.21e4
60.61
  • 60.61
  • 59.34
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.58
  • 60.58
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.11
  • 59.11
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
57.00
  • 57.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.50
  • 47.50
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.76
  • 44.76
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000060168.

Cross-references

EnsemblENSDARG00000060168 (fam160b1)
ZFINZDB-GENE-070424-63 (fam160b1)
EMBLBX957309
Uniprot/SPTREMBLB8A6I3, B8A6I3_DANRE, B8A6I4, B8A6I4_DANRE

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