D. rerio Gene: trmt10b - ENSDARG00000060176 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060176
Nametrmt10b
DescriptiontRNA methyltransferase 10B [Source:ZFIN;Acc:ZDB-GENE-061013-313]
OrganismDanio rerio (zebrafish)
Synonym(s)rg9mtd3, zgc:153341
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.19
  • 79.19
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
8.26e3
  • 8.26e3
  • 9.71e3
72.35
  • 72.35
  • 67.48
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.62e3
  • 8.62e3
71.15
  • 71.15
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.93e3
  • 8.93e3
70.09
  • 70.09
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.47e3
  • 9.47e3
68.28
  • 68.28
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.84e3
  • 9.84e3
67.05
  • 67.05
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.49
  • 64.49
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.07e4
  • 1.07e4
  • 1.24e4
64.15
  • 64.15
  • 58.52
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.09e4
  • 1.09e4
  • 1.16e4
  • 1.43e4
  • 1.64e4
  • 1.70e4
63.52
  • 63.52
  • 61.32
  • 52.04
  • 44.93
  • 42.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.28
  • 62.28
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.14e4
  • 1.14e4
61.99
  • 61.99
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.20e4
  • 1.20e4
  • 1.33e4
59.67
  • 59.67
  • 55.55
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.34
  • 57.34
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.61
  • 56.61
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.30e4
  • 1.30e4
  • 1.33e4
56.40
  • 56.40
  • 55.59
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.40
  • 55.40
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.04
  • 54.04
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.49
  • 53.49
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.42
  • 53.42
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
  • 1.83e4
51.95
  • 51.95
  • 38.69
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.21
  • 51.21
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.95
  • 49.95
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.19
  • 48.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000060176 (trmt10b)
ZFINZDB-GENE-061013-313 (trmt10b)
EMBLCABZ01030284, CABZ01030285, CABZ01030286
Uniprot/SPTREMBLF1REK3, F1REK3_DANRE

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