D. rerio Gene: si:ch211-216b21.2 - ENSDARG00000060253 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060253
Namesi:ch211-216b21.2
Descriptionsi:ch211-216b21.2 [Source:ZFIN;Acc:ZDB-GENE-130603-96]
OrganismDanio rerio (zebrafish)
Orthologs(s)34 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.83
  • 65.83
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.23e4
  • 1.23e4
58.87
  • 58.87
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
  • 2.34e4
47.34
  • 47.34
  • 21.61
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.60e4
  • 1.60e4
  • 1.69e4
  • 1.93e4
  • 1.95e4
  • 1.96e4
46.55
  • 46.55
  • 43.49
  • 35.23
  • 34.60
  • 34.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.62e4
  • 1.62e4
45.78
  • 45.78
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.64e4
  • 1.64e4
44.99
  • 44.99
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.97
  • 40.97
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.69
  • 40.69
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.78e4
  • 1.78e4
  • 1.88e4
40.46
  • 40.46
  • 37.09
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.09
  • 40.09
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.74
  • 38.74
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.12
  • 27.12
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.79
  • 24.79
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species28 genesCompare expression
Bilateria21 species34 genesCompare expression

Orthology information comes from OMA : ENSDARG00000060253.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Vertebrata2 genesCompare expression
Bilateria3 genesCompare expression
Eumetazoa4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060253.

Cross-references

EnsemblENSDARG00000060253 (si:ch211-216b21.2)
ZFINZDB-GENE-130603-96 (si:ch211-216b21.2)
EMBLCABZ01040120, CABZ01040121, CABZ01040122, CABZ01040123, CABZ01040124, CABZ01040125, CR749163
Uniprot/SPTREMBLE7F3X3, E7F3X3_DANRE, U3JAL4, U3JAL4_DANRE

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