Gene: zgc:162160 - ENSDARG00000060259 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000060259
Name	zgc:162160
Description	zgc:162160 [Source:ZFIN;Acc:ZDB-GENE-070424-22]
Organism	Danio rerio (zebrafish)
Orthologs(s)	38 orthologs
Paralog(s)	25 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	7.39e3 7.39e3	75.24 75.24	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	9.35e3 9.35e3 1.14e4	68.71 68.71 61.70	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.05e4 1.05e4	64.75 64.75	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.23e4 1.23e4	58.72 58.72	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	1.36e4 1.36e4	54.47 54.47	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	1.42e4 1.42e4 1.51e4	52.51 52.51 49.53	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 2 stages UBERON:0000104life cycle UBERON:0000066fully formed stage	1.49e4 1.49e4 1.52e4	49.94 49.94 49.00	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	1.64e4 1.64e4 1.85e4 1.91e4 1.95e4 2.04e4	45.22 45.22 37.97 35.97 34.56 31.54	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.76e4 1.76e4 2.07e4	41.04 41.04 30.82	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.78e4 1.78e4	40.31 40.31	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.84e4 1.84e4 1.94e4	38.47 38.47 34.97	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.84e4 1.84e4	38.31 38.31	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.98e4 1.98e4	33.69 33.69	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	2.03e4 2.03e4	32.08 32.08	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.20e4 2.20e4	26.46 26.46	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.35e4 2.35e4	21.45 21.45	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	19 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	37 genes ENSG00000120457 KCNJ5 ENSG00000157542 KCNJ6 ENSMUSG00000032034 Kcnj5 ENSMUSG00000043301 Kcnj6 ENSPTRG00000004469 KCNJ5 ENSGGOG00000003812 KCNJ6 ENSGGOG00000028551 KCNJ5 ENSMMUG00000003145 KCNJ5 ENSMMUG00000018136 KCNJ6 ENSRNOG00000001658 Kcnj6 ENSRNOG00000033796 Kcnj5 ENSBTAG00000006902 KCNJ5 ENSBTAG00000037616 KCNJ6 ENSSSCG00000012065 KCNJ6 ENSSSCG00000021573 KCNJ5 ENSECAG00000004703 KCNJ6 ENSECAG00000025007 KCNJ5 ENSOCUG00000012419 KCNJ6 ENSOCUG00000015565 KCNJ5 ENSCAFG00000009812 KCNJ6 ENSCAFG00000010255 KCNJ5 ENSFCAG00000005152 KCNJ6 ENSFCAG00000027850 KCNJ5 ENSCPOG00000009568 KCNJ6 ENSCPOG00000010343 KCNJ5 ENSEEUG00000005570 KCNJ5 ENSEEUG00000008891 KCNJ6 ENSMODG00000004783 KCNJ5 ENSMODG00000020981 KCNJ6 ENSOANG00000000571 KCNJ5 ENSOANG00000006415 KCNJ6 ENSGALG00000001181 KCNJ5 ENSGALG00000016054 KCNJ6 ENSACAG00000009168 KCNJ6 ENSACAG00000024629 KCNJ5 ENSXETG00000017827 kcnj9 ENSXETG00000023557 KCNJ6	Compare expression	[+]
Bilateria	20 species Homo sapiens (human) Mus musculus (mouse) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	38 genes ENSG00000120457 KCNJ5 ENSG00000157542 KCNJ6 ENSMUSG00000032034 Kcnj5 ENSMUSG00000043301 Kcnj6 WBGene00002150 irk-2 ENSPTRG00000004469 KCNJ5 ENSGGOG00000003812 KCNJ6 ENSGGOG00000028551 KCNJ5 ENSMMUG00000003145 KCNJ5 ENSMMUG00000018136 KCNJ6 ENSRNOG00000001658 Kcnj6 ENSRNOG00000033796 Kcnj5 ENSBTAG00000006902 KCNJ5 ENSBTAG00000037616 KCNJ6 ENSSSCG00000012065 KCNJ6 ENSSSCG00000021573 KCNJ5 ENSECAG00000004703 KCNJ6 ENSECAG00000025007 KCNJ5 ENSOCUG00000012419 KCNJ6 ENSOCUG00000015565 KCNJ5 ENSCAFG00000009812 KCNJ6 ENSCAFG00000010255 KCNJ5 ENSFCAG00000005152 KCNJ6 ENSFCAG00000027850 KCNJ5 ENSCPOG00000009568 KCNJ6 ENSCPOG00000010343 KCNJ5 ENSEEUG00000005570 KCNJ5 ENSEEUG00000008891 KCNJ6 ENSMODG00000004783 KCNJ5 ENSMODG00000020981 KCNJ6 ENSOANG00000000571 KCNJ5 ENSOANG00000006415 KCNJ6 ENSGALG00000001181 KCNJ5 ENSGALG00000016054 KCNJ6 ENSACAG00000009168 KCNJ6 ENSACAG00000024629 KCNJ5 ENSXETG00000017827 kcnj9 ENSXETG00000023557 KCNJ6	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000060259.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	2 genes ENSDARG00000058985 KCNJ6 ENSDARG00000061014 kcnj5	Compare expression	[+]
Bilateria	9 genes ENSDARG00000019418 kcnj2a ENSDARG00000058985 KCNJ6 ENSDARG00000061014 kcnj5 ENSDARG00000061636 kcnj9 ENSDARG00000062618 si:ch211-23l10.2 ENSDARG00000068110 KCNJ4 ENSDARG00000075914 kcnj14 ENSDARG00000104389 kcnj2b ENSDARG00000104965 kcnj12	Compare expression	[+]
Opisthokonta	24 genes ENSDARG00000002666 kcnj1b ENSDARG00000019418 kcnj2a ENSDARG00000031438 kcnj11l ENSDARG00000045589 kcnj8 ENSDARG00000051880 kcnj11 ENSDARG00000058985 KCNJ6 ENSDARG00000058988 KCNJ15 ENSDARG00000061014 kcnj5 ENSDARG00000061636 kcnj9 ENSDARG00000062618 si:ch211-23l10.2 ENSDARG00000068110 KCNJ4 ENSDARG00000075914 kcnj14 ENSDARG00000086248 kcnj1a.3 ENSDARG00000088484 kcnj1a.6 ENSDARG00000089060 kcnj1a.5 ENSDARG00000090635 kcnj1a.4 ENSDARG00000090815 kcnj10a ENSDARG00000090866 kcnj1a.2 ENSDARG00000091232 kcnj1a.1 ENSDARG00000102326 KCNJ11 (1 to many) ENSDARG00000103332 KCNJ10 (1 to many) ENSDARG00000104389 kcnj2b ENSDARG00000104965 kcnj12 ENSDARG00000105022 KCNJ10 (1 to many)	Compare expression	[+]
Eukaryota	25 genes ENSDARG00000002666 kcnj1b ENSDARG00000019418 kcnj2a ENSDARG00000031438 kcnj11l ENSDARG00000040701 si:ch211-113j13.2 ENSDARG00000045589 kcnj8 ENSDARG00000051880 kcnj11 ENSDARG00000058985 KCNJ6 ENSDARG00000058988 KCNJ15 ENSDARG00000061014 kcnj5 ENSDARG00000061636 kcnj9 ENSDARG00000062618 si:ch211-23l10.2 ENSDARG00000068110 KCNJ4 ENSDARG00000075914 kcnj14 ENSDARG00000086248 kcnj1a.3 ENSDARG00000088484 kcnj1a.6 ENSDARG00000089060 kcnj1a.5 ENSDARG00000090635 kcnj1a.4 ENSDARG00000090815 kcnj10a ENSDARG00000090866 kcnj1a.2 ENSDARG00000091232 kcnj1a.1 ENSDARG00000102326 KCNJ11 (1 to many) ENSDARG00000103332 KCNJ10 (1 to many) ENSDARG00000104389 kcnj2b ENSDARG00000104965 kcnj12 ENSDARG00000105022 KCNJ10 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000060259.

Cross-references

Ensembl	ENSDARG00000060259 (zgc:162160)
ZFIN	ZDB-GENE-070424-22 (zgc:162160)
EMBL	BX901899, CU104741
Uniprot/SPTREMBL	F1R1B8, F1R1B8_DANRE