D. rerio Gene: tfcp2 - ENSDARG00000060306 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060306
Nametfcp2
Descriptiontranscription factor CP2 [Source:ZFIN;Acc:ZDB-GENE-030131-2523]
OrganismDanio rerio (zebrafish)
Synonym(s)fc10e04, si:ch211-210c8.8, wu:fc10e04
Orthologs(s)16 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
939
  • 939
  • 3.01e3
  • 3.05e3
  • 3.13e3
  • 3.22e3
  • 3.27e3
  • 3.51e3
  • 3.67e3
  • 4.26e3
  • 4.41e3
  • 4.54e3
  • 4.58e3
  • 4.83e3
  • 5.24e3
96.86
  • 96.86
  • 89.92
  • 89.79
  • 89.51
  • 89.21
  • 89.04
  • 88.26
  • 87.71
  • 85.75
  • 85.23
  • 84.81
  • 84.67
  • 83.84
  • 82.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.43e3
  • 1.43e3
  • 1.43e3
  • 1.48e3
  • 2.89e3
  • 3.51e3
95.23
  • 95.23
  • 95.22
  • 95.04
  • 90.31
  • 88.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.51e3
  • 1.51e3
94.95
  • 94.95
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.17e3
  • 2.17e3
92.72
  • 92.72
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
2.76e3
  • 2.76e3
  • 3.32e3
  • 3.52e3
  • 3.52e3
  • 3.67e3
  • 3.88e3
90.78
  • 90.78
  • 88.87
  • 88.23
  • 88.22
  • 87.70
  • 87.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.93e3
  • 2.93e3
90.20
  • 90.20
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.97e3
  • 2.97e3
  • 5.87e3
90.06
  • 90.06
  • 80.33
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.05e3
  • 3.05e3
  • 4.22e3
  • 4.28e3
  • 4.38e3
  • 4.39e3
  • 4.41e3
  • 5.20e3
  • 5.21e3
  • 5.53e3
  • 8.76e3
89.79
  • 89.79
  • 85.89
  • 85.66
  • 85.32
  • 85.30
  • 85.25
  • 82.60
  • 82.56
  • 81.48
  • 70.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.40e3
  • 3.40e3
88.63
  • 88.63
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.41e3
  • 3.41e3
88.59
  • 88.59
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
3.54e3
  • 3.54e3
  • 5.49e3
  • 7.13e3
  • 7.68e3
88.14
  • 88.14
  • 81.62
  • 76.14
  • 74.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
87.28
  • 87.28
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.07e3
  • 4.07e3
  • 4.43e3
86.39
  • 86.39
  • 85.19
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.14e3
  • 4.14e3
  • 4.29e3
86.14
  • 86.14
  • 85.62
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.36e3
  • 4.36e3
  • 5.20e3
  • 5.31e3
85.39
  • 85.39
  • 82.60
  • 82.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
85.26
  • 85.26
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.90
  • 84.90
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.59e3
  • 4.59e3
84.63
  • 84.63
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
84.28
  • 84.28
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.03
  • 84.03
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.21
  • 83.21
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.77
  • 82.77
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.32e3
  • 5.32e3
82.18
  • 82.18
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.35e3
  • 5.35e3
82.08
  • 82.08
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.37e3
  • 5.37e3
82.02
  • 82.02
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.67e3
  • 5.67e3
81.01
  • 81.01
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.89
  • 80.89
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.93e3
  • 5.93e3
  • 6.60e3
80.16
  • 80.16
  • 77.91
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.31e3
  • 6.31e3
78.88
  • 78.88
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.11e3
  • 7.11e3
76.21
  • 76.21
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.27e3
  • 7.27e3
75.65
  • 75.65
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Deuterostomia2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060306.

Cross-references

EnsemblENSDARG00000060306 (tfcp2)
ZFINZDB-GENE-030131-2523 (tfcp2)
EMBLCR354542
Uniprot/SPTREMBLE7EYC1, E7EYC1_DANRE

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