D. rerio Gene: plxna2 - ENSDARG00000060372 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060372
Nameplxna2
Descriptionplexin A2 [Source:ZFIN;Acc:ZDB-GENE-090311-6]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-164k14.1
Orthologs(s)17 orthologs
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.76e3
  • 1.76e3
94.12
  • 94.12
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
5.19e3
  • 5.19e3
  • 1.00e4
  • 1.43e4
  • 1.48e4
  • 1.52e4
82.63
  • 82.63
  • 66.50
  • 51.98
  • 50.55
  • 49.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.95e3
  • 8.95e3
  • 1.12e4
70.02
  • 70.02
  • 62.46
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.35
  • 64.35
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.26
  • 62.26
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.17e4
  • 1.17e4
60.93
  • 60.93
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.21e4
  • 1.21e4
  • 1.25e4
59.61
  • 59.61
  • 58.14
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
  • 1.41e4
58.15
  • 58.15
  • 52.86
AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.31e4
  • 1.31e4
  • 1.31e4
56.22
  • 56.22
  • 56.22
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.39e4
  • 1.39e4
  • 1.73e4
53.57
  • 53.57
  • 42.02
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.39e4
  • 1.39e4
  • 1.40e4
53.55
  • 53.55
  • 53.10
AEIR
  • AEIR
  • AEIR
UBERON:0003104mesenchyme
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2007031anterior neural rod
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2007062olfactory field
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.53e4
  • 1.53e4
  • 1.56e4
48.69
  • 48.69
  • 47.73
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.58e4
  • 1.58e4
47.13
  • 47.13
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.04
  • 46.04
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.03
  • 44.03
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.85
  • 43.85
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.32
  • 42.32
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.16
  • 42.16
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.24
  • 40.24
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.13
  • 39.13
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.79
  • 37.79
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
34.90
  • 34.90
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.06
  • 33.06
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
26.97
  • 26.97
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.79
  • 24.79
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata8 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060372.

Cross-references

EnsemblENSDARG00000060372 (plxna2)
ZFINZDB-GENE-090311-6 (plxna2)
EMBLBX470150, CR678070, CR753882
Uniprot/SPTREMBLF1QCL2, F1QCL2_DANRE, F1RAY5, F1RAY5_DANRE

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