D. rerio Gene: fibcd1 - ENSDARG00000060393 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060393
Namefibcd1
Descriptionfibrinogen C domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-070424-245]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-54o1.1
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.79e3
  • 7.79e3
73.92
  • 73.92
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.44e3
  • 8.44e3
71.73
  • 71.73
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
9.19e3
  • 9.19e3
69.24
  • 69.24
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.13
  • 62.13
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.24e4
  • 1.24e4
  • 1.48e4
  • 1.57e4
  • 1.97e4
  • 2.02e4
58.31
  • 58.31
  • 50.56
  • 47.58
  • 34.03
  • 32.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.26e4
  • 1.26e4
  • 1.40e4
57.87
  • 57.87
  • 53.25
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.46e4
  • 1.46e4
  • 1.87e4
51.16
  • 51.16
  • 37.52
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
  • 1.73e4
48.47
  • 48.47
  • 42.20
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.58e4
  • 1.58e4
47.02
  • 47.02
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.65e4
  • 1.65e4
44.90
  • 44.90
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.64
  • 44.64
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.25
  • 43.25
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.08
  • 43.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.52
  • 42.52
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.69
  • 39.69
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.25
  • 39.25
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
  • 2.12e4
39.23
  • 39.23
  • 28.91
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.70
  • 30.70
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.24
  • 29.24
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.23
  • 28.23
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000060393 (fibcd1)
ZFINZDB-GENE-070424-245 (fibcd1)
EMBLBX296533, CT573108
Uniprot/SPTREMBLA5PMA3, A5PMA3_DANRE

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