D. rerio Gene: clcn2c - ENSDARG00000060439 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060439
Nameclcn2c
Descriptionchloride channel 2c [Source:ZFIN;Acc:ZDB-GENE-050506-73]
OrganismDanio rerio (zebrafish)
Synonym(s)clc-2c, im:6903943, si:ch211-229n1.3
Orthologs(s)9 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.33e3
  • 1.33e3
95.54
  • 95.54
AEIR
  • AEIR
CL:0000319mucus secreting cell
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.48e3
  • 4.48e3
  • 4.98e3
  • 9.96e3
  • 9.96e3
  • 1.15e4
  • 1.15e4
  • 1.15e4
85.00
  • 85.00
  • 83.33
  • 66.66
  • 66.66
  • 61.53
  • 61.53
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.92e3
  • 4.92e3
83.53
  • 83.53
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.88e3
  • 7.88e3
73.61
  • 73.61
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.59e3
  • 8.59e3
  • 1.72e4
71.25
  • 71.25
  • 42.54
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.97
  • 65.97
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.04e4
  • 1.04e4
  • 1.37e4
  • 1.41e4
65.24
  • 65.24
  • 53.99
  • 52.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000068embryo stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
1.05e4
  • 1.05e4
  • 1.39e4
  • 1.41e4
  • 1.41e4
  • 1.47e4
  • 1.48e4
  • 1.50e4
  • 1.51e4
  • 1.55e4
  • 1.58e4
  • 1.61e4
  • 1.63e4
64.94
  • 64.94
  • 53.32
  • 52.87
  • 52.69
  • 50.70
  • 50.33
  • 49.80
  • 49.41
  • 47.97
  • 47.13
  • 46.10
  • 45.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.07e4
  • 1.07e4
  • 1.19e4
  • 1.48e4
64.29
  • 64.29
  • 60.07
  • 50.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.01
  • 63.01
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
  • 1.75e4
  • 2.15e4
62.87
  • 62.87
  • 41.54
  • 28.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
61.88
  • 61.88
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.29
  • 61.29
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.16e4
  • 1.16e4
  • 1.37e4
  • 1.52e4
61.23
  • 61.23
  • 54.14
  • 49.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.20e4
  • 1.20e4
59.74
  • 59.74
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.69
  • 57.69
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.32e4
  • 1.32e4
55.81
  • 55.81
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.39
  • 55.39
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.46e4
  • 1.46e4
51.12
  • 51.12
AEIR
  • AEIR
ZFA:0005325integument ionocyte (Danio)
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000106extension
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0005579NCC ionocyte (Danio)
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.14
  • 43.14
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.25
  • 34.25
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.08
  • 27.08
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.49
  • 25.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species9 genesCompare expression

Orthology information comes from OMA : ENSDARG00000060439.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Bilateria2 genesCompare expression
Metazoa4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060439.

Cross-references

EnsemblENSDARG00000060439 (clcn2c)
ZFINZDB-GENE-050506-73 (clcn2c)
EMBLCR381579, LN610100
Uniprot/SPTREMBLA0A0N4STP3, A0A0N4STP3_DANRE, A0A0N4SUD4, A0A0N4SUD4_DANRE, E7FCE2, E7FCE2_DANRE

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