Gene: dpcd - ENSDARG00000060501 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000060501
Name	dpcd
Description	deleted in primary ciliary dyskinesia homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-060825-166]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:153412
Orthologs(s)	23 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	579 579	98.06 98.06	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	2.35e3 2.35e3	92.13 92.13	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	3.27e3 3.27e3 4.09e3	89.05 89.05 86.32	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	3.75e3 3.75e3	87.43 87.43	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	3.94e3 3.94e3	86.82 86.82	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	4.34e3 4.34e3 5.80e3 6.02e3 1.17e4 1.27e4	85.47 85.47 80.58 79.85 60.97 57.49	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	4.39e3 4.39e3	85.30 85.30	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	7.22e3 7.22e3 7.85e3	75.83 75.83 73.72	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	7.50e3 7.50e3 1.24e4	74.90 74.90 58.52	AEIR AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	7.67e3 7.67e3	74.31 74.31	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	8.05e3 8.05e3	73.05 73.05	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	8.09e3 8.09e3	72.90 72.90	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	8.71e3 8.71e3	70.84 70.84	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	9.12e3 9.12e3 1.15e4	69.45 69.45 61.61	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	9.17e3 9.17e3	69.30 69.30	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	9.29e3 9.29e3 1.23e4	68.90 68.90 58.96	AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	9.70e3 9.70e3	67.54 67.54	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	9.86e3 9.86e3	67.00 67.00	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	9.86e3 9.86e3	66.99 66.99	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	9.93e3 9.93e3	66.76 66.76	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.04e4 1.04e4	65.21 65.21	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.10e4 1.10e4	63.24 63.24	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.12e4 1.12e4	62.49 62.49	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.23e4 1.23e4	58.90 58.90	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog)	17 genes ENSG00000166171 DPCD ENSMUSG00000041035 Dpcd ENSPTRG00000002871 DPCD ENSGGOG00000005035 DPCD ENSMMUG00000006751 DPCD ENSRNOG00000017241 Dpcd ENSBTAG00000003578 DPCD ENSSSCG00000010565 DPCD ENSECAG00000009848 DPCD ENSOCUG00000015373 DPCD ENSCAFG00000009904 DPCD ENSFCAG00000015702 DPCD ENSCPOG00000005499 DPCD ENSEEUG00000004150 DPCD ENSOANG00000007314 DPCD ENSGALG00000007731 DPCD ENSXETG00000010773 dpcd	Compare expression	[+]
Bilateria	23 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	23 genes ENSG00000166171 DPCD ENSMUSG00000041035 Dpcd FBgn0035164 CG13901 ENSPTRG00000002871 DPCD ENSGGOG00000005035 DPCD ENSMMUG00000006751 DPCD ENSRNOG00000017241 Dpcd ENSBTAG00000003578 DPCD ENSSSCG00000010565 DPCD ENSECAG00000009848 DPCD ENSOCUG00000015373 DPCD ENSCAFG00000009904 DPCD ENSFCAG00000015702 DPCD ENSCPOG00000005499 DPCD ENSEEUG00000004150 DPCD ENSOANG00000007314 DPCD ENSGALG00000007731 DPCD ENSXETG00000010773 dpcd FBgn0102017 GF25025 FBgn0135049 GI12292 FBgn0185217 GD13506 FBgn0200455 GJ13229 FBgn0238275 GE20992	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000060501.

Cross-references

Ensembl	ENSDARG00000060501 (dpcd)
ZFIN	ZDB-GENE-060825-166 (dpcd)
EMBL	BC122278, CR759807
Uniprot/SPTREMBL	B8JIE8, B8JIE8_DANRE
Uniprot/SWISSPROT	DPCD_DANRE, Q0P448