D. rerio Gene: bmp3 - ENSDARG00000060526 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060526
Namebmp3
Descriptionbone morphogenetic protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7192]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fk96e01, zgc:153939
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.02e3
  • 1.02e3
  • 2.30e3
  • 9.96e3
  • 1.35e4
  • 1.42e4
96.59
  • 96.59
  • 92.31
  • 66.67
  • 54.83
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.53
  • 93.53
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.74e3
  • 4.74e3
  • 6.42e3
84.14
  • 84.14
  • 78.50
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
5.18e3
  • 5.18e3
82.66
  • 82.66
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
6.15e3
  • 6.15e3
  • 7.79e3
  • 8.49e3
  • 8.51e3
  • 9.77e3
79.40
  • 79.40
  • 73.90
  • 71.58
  • 71.51
  • 67.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
6.85e3
  • 6.85e3
  • 9.96e3
  • 1.49e4
  • 1.55e4
77.06
  • 77.06
  • 66.67
  • 50.00
  • 48.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.72e3
  • 7.72e3
74.17
  • 74.17
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.28e4
66.67
  • 66.67
  • 65.61
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.36e4
  • 1.40e4
62.50
  • 62.50
  • 54.53
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.19e4
  • 1.19e4
60.19
  • 60.19
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.35e4
  • 1.49e4
57.14
  • 57.14
  • 54.97
  • 54.96
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.31e4
  • 1.31e4
  • 1.31e4
56.22
  • 56.22
  • 56.22
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.06
  • 53.06
AEIR
  • AEIR
UBERON:0001708jaw skeleton
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000476branchiostegal ray
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000250opercle
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.78
  • 49.78
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.17
  • 46.17
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.61
  • 44.61
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.08
  • 44.08
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.39
  • 43.39
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.76e4
  • 1.76e4
40.95
  • 40.95
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
38.92
  • 38.92
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.04
  • 28.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000060526 (bmp3)
ZFINZDB-GENE-030131-7192 (bmp3)
EMBLAL929533
Uniprot/SPTREMBLA2AVJ4, A2AVJ4_DANRE

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