D. rerio Gene: shank1 - ENSDARG00000060539 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060539
Nameshank1
DescriptionSH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-105i19.4, zmp:0000000688

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.04e3
  • 8.04e3
73.08
  • 73.08
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.24e3
  • 8.24e3
72.39
  • 72.39
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.20e4
  • 1.20e4
  • 1.42e4
  • 1.84e4
59.65
  • 59.65
  • 52.43
  • 38.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
  • 1.60e4
49.53
  • 49.53
  • 46.50
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.74e4
  • 1.74e4
41.75
  • 41.75
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.78
  • 37.78
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.87e4
  • 1.87e4
  • 2.04e4
37.30
  • 37.30
  • 31.74
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.01
  • 33.01
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.41e4
  • 2.41e4
19.35
  • 19.35
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000060539 (shank1)
ZFINZDB-GENE-130530-691 (shank1)
EMBLBX682556
Uniprot/SPTREMBLX1WCZ6, X1WCZ6_DANRE

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