D. rerio Gene: ctdspl2b - ENSDARG00000060586 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060586
Namectdspl2b
DescriptionCTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-1809]
OrganismDanio rerio (zebrafish)
Synonym(s)ctdspl2, fb81c12, wu:fb81c12, zgc:162265

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.72e3
  • 1.72e3
  • 1.82e3
  • 5.48e3
  • 9.07e3
  • 9.46e3
94.25
  • 94.25
  • 93.90
  • 81.66
  • 69.64
  • 68.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.08e3
  • 2.08e3
  • 4.34e3
  • 6.56e3
  • 1.01e4
93.04
  • 93.04
  • 85.46
  • 78.04
  • 66.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.27e3
  • 2.27e3
92.39
  • 92.39
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
2.74e3
  • 2.74e3
  • 4.96e3
  • 5.10e3
  • 5.56e3
  • 6.27e3
  • 6.56e3
90.82
  • 90.82
  • 83.38
  • 82.91
  • 81.40
  • 79.00
  • 78.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.80e3
  • 2.80e3
90.64
  • 90.64
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.20e3
  • 3.20e3
89.27
  • 89.27
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
3.24e3
  • 3.24e3
  • 3.61e3
  • 3.67e3
  • 4.49e3
  • 4.78e3
  • 4.85e3
  • 4.92e3
  • 5.14e3
  • 5.41e3
  • 5.71e3
  • 5.87e3
  • 6.09e3
  • 6.12e3
  • 6.40e3
  • 1.49e4
  • 1.49e4
  • 1.50e4
89.16
  • 89.16
  • 87.91
  • 87.71
  • 84.96
  • 84.01
  • 83.75
  • 83.53
  • 82.80
  • 81.89
  • 80.89
  • 80.36
  • 79.60
  • 79.51
  • 78.56
  • 50.25
  • 50.20
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.67e3
  • 3.67e3
87.70
  • 87.70
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
3.82e3
  • 3.82e3
  • 4.64e3
  • 4.65e3
  • 4.75e3
  • 5.04e3
  • 5.30e3
  • 5.66e3
  • 6.34e3
  • 6.46e3
  • 7.34e3
87.21
  • 87.21
  • 84.46
  • 84.44
  • 84.10
  • 83.12
  • 82.25
  • 81.05
  • 78.76
  • 78.37
  • 75.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.86e3
  • 3.86e3
87.08
  • 87.08
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.93e3
  • 3.93e3
  • 5.41e3
86.86
  • 86.86
  • 81.87
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.24e3
  • 4.24e3
  • 5.71e3
85.81
  • 85.81
  • 80.87
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.38e3
  • 4.38e3
85.34
  • 85.34
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
4.61e3
  • 4.61e3
84.57
  • 84.57
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.85e3
  • 4.85e3
83.77
  • 83.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
83.60
  • 83.60
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.15
  • 83.15
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.05e3
  • 5.05e3
  • 5.80e3
83.09
  • 83.09
  • 80.58
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
5.11e3
  • 5.11e3
  • 5.19e3
  • 5.39e3
82.89
  • 82.89
  • 82.63
  • 81.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.20e3
  • 5.20e3
82.60
  • 82.60
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.21e3
  • 5.21e3
  • 7.90e3
82.55
  • 82.55
  • 73.55
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.33e3
  • 5.33e3
82.15
  • 82.15
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.19
  • 79.19
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.22e3
  • 6.22e3
79.18
  • 79.18
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.40e3
  • 6.40e3
78.58
  • 78.58
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.83
  • 75.83
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.51e3
  • 7.51e3
74.84
  • 74.84
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.68e3
  • 7.68e3
74.30
  • 74.30
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.79e3
  • 7.79e3
73.91
  • 73.91
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.82e3
  • 8.82e3
70.46
  • 70.46
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.83e3
  • 9.83e3
67.09
  • 67.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EnsemblENSDARG00000060586 (ctdspl2b)
ZFINZDB-GENE-030131-1809 (ctdspl2b)
EMBLBC139560
Uniprot/SWISSPROTA4QNX6, CTL2B_DANRE

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