D. rerio Gene: zgc:158659 - ENSDARG00000060597 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060597
Namezgc:158659
Descriptionzgc:158659 [Source:ZFIN;Acc:ZDB-GENE-070112-492]
OrganismDanio rerio (zebrafish)
Orthologs(s)2 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
5.82e3
  • 5.82e3
  • 1.65e4
  • 1.76e4
  • 1.77e4
  • 1.97e4
80.53
  • 80.53
  • 44.86
  • 40.94
  • 40.59
  • 34.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.34e3
  • 8.34e3
72.07
  • 72.07
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.16e3
  • 9.16e3
  • 1.15e4
69.33
  • 69.33
  • 61.42
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.06
  • 59.06
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.16
  • 57.16
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.26
  • 53.26
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
  • 1.92e4
52.88
  • 52.88
  • 35.61
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.08
  • 52.08
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.54e4
  • 1.54e4
  • 1.81e4
48.54
  • 48.54
  • 39.40
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.61e4
  • 1.61e4
46.01
  • 46.01
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.44
  • 44.44
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.78
  • 43.78
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.25
  • 42.25
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.65
  • 41.65
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.42
  • 40.42
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.75
  • 36.75
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.63
  • 36.63
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.82
  • 27.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression
Bilateria2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000060597.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta3 genesCompare expression
Eukaryota4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060597.

Cross-references

EnsemblENSDARG00000060597 (zgc:158659)
ZFINZDB-GENE-070112-492 (zgc:158659)
EMBLCU855943, CU856236
Uniprot/SPTREMBLF1QZY0, F1QZY0_DANRE, F8W2C2, F8W2C2_DANRE, F8W3P4, F8W3P4_DANRE

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