D. rerio Gene: cd109 - ENSDARG00000060609 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060609
Namecd109
DescriptionCD109 molecule [Source:ZFIN;Acc:ZDB-GENE-120215-253]
OrganismDanio rerio (zebrafish)
Synonym(s)si:zfos-875e8.2
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.21e4
  • 1.21e4
  • 1.37e4
  • 1.55e4
  • 1.68e4
  • 1.69e4
  • 1.71e4
59.55
  • 59.55
  • 54.03
  • 48.22
  • 43.69
  • 43.58
  • 42.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.44
  • 56.44
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.46e4
  • 1.46e4
50.97
  • 50.97
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.59e4
  • 1.59e4
  • 1.88e4
46.87
  • 46.87
  • 36.91
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.64e4
  • 1.64e4
  • 1.78e4
  • 1.95e4
  • 2.11e4
45.06
  • 45.06
  • 40.40
  • 34.71
  • 29.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.68e4
  • 1.68e4
  • 1.85e4
  • 1.89e4
43.64
  • 43.64
  • 38.08
  • 36.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.10
  • 43.10
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.73e4
  • 1.73e4
41.97
  • 41.97
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
40.56
  • 40.56
  • 40.55
  • 40.43
  • 40.38
  • 39.42
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.81e4
  • 1.81e4
39.55
  • 39.55
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.56
  • 38.56
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
30.89
  • 30.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000060609.

Cross-references

EnsemblENSDARG00000060609 (cd109)
ZFINZDB-GENE-120215-253 (cd109)
EMBLCABZ01008072, CABZ01008073, CABZ01008074, CU525921, CU855808
Uniprot/SPTREMBLE7FAX3, E7FAX3_DANRE, I3IS91, I3IS91_DANRE

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