D. rerio Gene: lig4 - ENSDARG00000060620 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060620
Namelig4
Descriptionligase IV, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-070820-10]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:165595
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.44e3
  • 5.44e3
  • 1.47e4
81.80
  • 81.80
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.49e3
  • 7.49e3
74.94
  • 74.94
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
7.96e3
  • 7.96e3
  • 1.12e4
73.35
  • 73.35
  • 62.35
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.07e3
  • 9.07e3
69.64
  • 69.64
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.74e3
  • 9.74e3
  • 1.02e4
67.39
  • 67.39
  • 65.70
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.06e4
  • 1.06e4
64.57
  • 64.57
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.06e4
  • 1.06e4
64.53
  • 64.53
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.56
  • 63.56
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.99
  • 61.99
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.96
  • 61.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.67
  • 61.67
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.61
  • 59.61
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.17
  • 58.17
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.98
  • 57.98
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
  • 1.34e4
57.58
  • 57.58
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.27e4
  • 1.27e4
  • 1.29e4
  • 1.29e4
  • 1.49e4
  • 1.78e4
57.50
  • 57.50
  • 56.95
  • 56.84
  • 50.09
  • 40.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.06
  • 57.06
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.39
  • 55.39
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.18
  • 55.18
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.38e4
  • 1.38e4
  • 1.70e4
53.87
  • 53.87
  • 42.92
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.61
  • 53.61
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.84
  • 52.84
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.41
  • 52.41
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.55
  • 51.55
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
  • 1.79e4
45.53
  • 45.53
  • 40.07
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000060620.

Cross-references

EnsemblENSDARG00000060620 (lig4)
ZFINZDB-GENE-070820-10 (lig4)
EMBLBX908780
Uniprot/SPTREMBLF1Q9E8, F1Q9E8_DANRE

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