D. rerio Gene: kdm1a - ENSDARG00000060679 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060679
Namekdm1a
Descriptionlysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
OrganismDanio rerio (zebrafish)
Synonym(s)aof2, kdm1, lsd1, wu:fb82e06, wu:fc51a02, wu:fj36a05, wu:fj66b06
Orthologs(s)25 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
349
  • 349
  • 767
  • 873
  • 907
  • 960
  • 1.67e3
98.83
  • 98.83
  • 97.43
  • 97.08
  • 96.97
  • 96.79
  • 94.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
529
  • 529
  • 696
  • 937
  • 938
  • 991
  • 1.05e3
  • 1.12e3
  • 1.21e3
  • 1.31e3
  • 1.63e3
98.23
  • 98.23
  • 97.67
  • 96.86
  • 96.86
  • 96.68
  • 96.48
  • 96.24
  • 95.94
  • 95.62
  • 94.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:00072322 cell stage
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000014Blastula:Sphere
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
544
  • 544
  • 631
  • 674
  • 706
  • 734
  • 764
  • 794
  • 816
  • 838
  • 854
  • 1.31e3
  • 1.49e3
  • 1.59e3
  • 2.03e3
  • 6.64e3
  • 6.79e3
  • 6.97e3
  • 8.96e3
  • 1.41e4
  • 1.50e4
98.18
  • 98.18
  • 97.89
  • 97.75
  • 97.64
  • 97.54
  • 97.44
  • 97.34
  • 97.27
  • 97.20
  • 97.14
  • 95.62
  • 95.03
  • 94.67
  • 93.22
  • 77.77
  • 77.27
  • 76.66
  • 69.99
  • 52.87
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
544
  • 544
98.18
  • 98.18
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
715
  • 715
  • 763
  • 1.03e3
  • 7.80e3
97.61
  • 97.61
  • 97.45
  • 96.56
  • 73.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
852
  • 852
97.15
  • 97.15
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
943
  • 943
96.85
  • 96.85
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.10e3
  • 1.10e3
  • 1.68e3
  • 2.11e3
  • 2.75e3
  • 3.64e3
96.32
  • 96.32
  • 94.36
  • 92.93
  • 90.78
  • 87.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.17e3
  • 1.17e3
96.07
  • 96.07
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.31e3
  • 1.31e3
  • 1.53e3
95.61
  • 95.61
  • 94.86
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.36e3
  • 1.36e3
  • 1.61e3
  • 2.44e3
95.45
  • 95.45
  • 94.60
  • 91.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.38e3
  • 1.38e3
95.38
  • 95.38
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.18
  • 95.18
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.48e3
  • 1.48e3
  • 1.50e3
95.03
  • 95.03
  • 94.97
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.59e3
  • 1.59e3
94.68
  • 94.68
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.68e3
  • 1.68e3
94.39
  • 94.39
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
  • 3.45e3
93.06
  • 93.06
  • 88.46
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.10e3
  • 2.10e3
92.97
  • 92.97
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.27e3
  • 2.27e3
92.41
  • 92.41
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.09
  • 92.09
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.44e3
  • 2.44e3
91.84
  • 91.84
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.56e3
  • 2.56e3
91.42
  • 91.42
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.40
  • 91.40
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
2.66e3
  • 2.66e3
  • 1.24e4
91.09
  • 91.09
  • 58.33
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.42
  • 90.42
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.76
  • 88.76
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.54e3
  • 3.54e3
  • 3.66e3
88.15
  • 88.15
  • 87.74
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.61e3
  • 3.61e3
87.90
  • 87.90
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.84e3
  • 3.84e3
87.14
  • 87.14
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
86.55
  • 86.55
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
85.87
  • 85.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000060679.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060679.

Cross-references

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