D. rerio Gene: agr1 - ENSDARG00000060682 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060682
Nameagr1
Descriptionanterior gradient 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7249]
OrganismDanio rerio (zebrafish)
Synonym(s)ag1, dag1, fl24a12, wu:fl24a12, zgc:165571
Orthologs(s)14 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
463
  • 463
  • 548
  • 667
  • 703
  • 1.34e3
98.45
  • 98.45
  • 98.17
  • 97.77
  • 97.65
  • 95.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
476
  • 476
  • 1.40e3
98.41
  • 98.41
  • 95.32
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
574
  • 574
  • 4.66e3
98.08
  • 98.08
  • 84.39
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
869
  • 869
97.09
  • 97.09
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
893
  • 893
  • 3.32e3
97.01
  • 97.01
  • 88.88
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.67e3
  • 1.67e3
94.41
  • 94.41
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.89e3
  • 1.89e3
93.67
  • 93.67
AEIR
  • AEIR
UBERON:0011150pharyngeal arch derived gill
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.01e3
  • 6.01e3
79.88
  • 79.88
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.94e3
  • 6.94e3
76.77
  • 76.77
AEIR
  • AEIR
UBERON:0002424oral epithelium
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.95e3
  • 7.95e3
73.37
  • 73.37
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.91e3
  • 8.91e3
  • 1.80e4
70.15
  • 70.15
  • 39.63
AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002107liver
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 2.01e4
62.48
  • 62.48
  • 32.60
AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
1.21e4
  • 1.21e4
  • 1.32e4
59.36
  • 59.36
  • 55.86
AEIR
  • AEIR
  • AEIR
UBERON:0007383enveloping layer of ectoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
1.22e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.31e4
  • 1.34e4
59.08
  • 59.08
  • 59.08
  • 58.32
  • 56.24
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000033Hatching:Long-pec
1.27e4
  • 1.27e4
57.47
  • 57.47
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.23
  • 57.23
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.12
  • 52.12
AEIR
  • AEIR
UBERON:0000964cornea
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001277intestinal epithelium
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000298vent
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:4000163anal fin
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003097dorsal fin
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0001484superficial blastomere (Danio)
  • ZFS:0000014Blastula:Sphere
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.39
  • 48.39
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.63
  • 29.63
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.10
  • 28.10
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.61
  • 24.61
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000060682.

Cross-references

EnsemblENSDARG00000060682 (agr1)
ZFINZDB-GENE-030131-7249 (agr1)
EMBLBX005108, JX566722
Uniprot/SPTREMBLE9QEK9, E9QEK9_DANRE, F1Q8B0, F1Q8B0_DANRE

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