D. rerio Gene: chd2 - ENSDARG00000060687 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060687
Namechd2
Descriptionchromodomain helicase DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-256]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-196l7.5
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
679
  • 679
  • 1.49e3
  • 4.01e3
  • 4.77e3
97.73
  • 97.73
  • 95.02
  • 86.59
  • 84.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.73e3
  • 1.73e3
  • 2.76e3
  • 3.30e3
  • 3.32e3
  • 3.58e3
  • 4.01e3
  • 4.02e3
  • 4.10e3
  • 4.10e3
  • 4.21e3
  • 4.75e3
  • 4.98e3
  • 5.44e3
  • 5.82e3
  • 6.14e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 1.39e4
  • 1.43e4
  • 1.44e4
94.20
  • 94.20
  • 90.76
  • 88.96
  • 88.87
  • 88.02
  • 86.59
  • 86.55
  • 86.28
  • 86.27
  • 85.90
  • 84.11
  • 83.33
  • 81.79
  • 80.51
  • 79.45
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
  • 53.44
  • 51.99
  • 51.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.23e3
  • 2.23e3
92.55
  • 92.55
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.28e3
  • 3.28e3
89.01
  • 89.01
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
3.36e3
  • 3.36e3
  • 4.11e3
  • 4.40e3
  • 4.86e3
  • 5.08e3
  • 5.62e3
  • 5.67e3
  • 6.64e3
  • 7.40e3
  • 8.50e3
88.74
  • 88.74
  • 86.23
  • 85.27
  • 83.74
  • 82.99
  • 81.19
  • 81.00
  • 77.75
  • 75.22
  • 71.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.85e3
  • 3.85e3
87.10
  • 87.10
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.97
  • 86.97
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.99e3
  • 3.99e3
86.63
  • 86.63
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.23e3
  • 4.23e3
85.83
  • 85.83
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.50e3
  • 4.50e3
84.94
  • 84.94
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.58e3
  • 4.58e3
84.66
  • 84.66
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.72e3
  • 4.72e3
84.18
  • 84.18
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
4.84e3
  • 4.84e3
  • 5.80e3
  • 1.21e4
83.81
  • 83.81
  • 80.58
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
5.11e3
  • 5.11e3
  • 5.24e3
  • 6.17e3
  • 7.11e3
  • 7.89e3
  • 8.59e3
82.88
  • 82.88
  • 82.44
  • 79.36
  • 76.21
  • 73.59
  • 71.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
5.34e3
  • 5.34e3
  • 7.80e3
  • 1.41e4
82.12
  • 82.12
  • 73.90
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
81.98
  • 81.98
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.43e3
  • 5.43e3
81.83
  • 81.83
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.73e3
  • 5.73e3
80.80
  • 80.80
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.75e3
  • 5.75e3
80.74
  • 80.74
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
5.86e3
  • 5.86e3
  • 6.80e3
  • 8.63e3
80.38
  • 80.38
  • 77.23
  • 71.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.88e3
  • 5.88e3
  • 6.08e3
80.32
  • 80.32
  • 79.65
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.89e3
  • 5.89e3
80.26
  • 80.26
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.18e3
  • 6.18e3
79.30
  • 79.30
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
77.86
  • 77.86
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
77.43
  • 77.43
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.19e3
  • 7.19e3
75.94
  • 75.94
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.41e3
  • 8.41e3
71.86
  • 71.86
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
8.93e3
  • 8.93e3
  • 1.06e4
  • 1.06e4
  • 1.06e4
  • 1.14e4
70.10
  • 70.10
  • 64.66
  • 64.64
  • 64.44
  • 61.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.97e3
  • 8.97e3
69.97
  • 69.97
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.12e4
  • 1.12e4
62.38
  • 62.38
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.34e4
57.14
  • 57.14
  • 55.21
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000060687.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000060687.

Cross-references

EnsemblENSDARG00000060687 (chd2)
ZFINZDB-GENE-050419-256 (chd2)
EMBLBX649578
Uniprot/SPTREMBLE7F7R2, E7F7R2_DANRE, F1QRB9, F1QRB9_DANRE, Q1LVN0, Q1LVN0_DANRE

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