D. rerio Gene: trim8b - ENSDARG00000060729 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060729
Nametrim8b
Descriptiontripartite motif containing 8b [Source:ZFIN;Acc:ZDB-GENE-030131-4325]
OrganismDanio rerio (zebrafish)
Synonym(s)loc797338, si:ch211-208d15.5, si:ch211-208d15.5gn, trim8, trim8gn, wu:fc90g07
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
2.89e3
  • 2.89e3
  • 3.73e3
  • 4.35e3
  • 4.41e3
  • 5.26e3
  • 5.30e3
  • 5.40e3
  • 5.72e3
  • 6.04e3
  • 7.41e3
  • 8.06e3
  • 8.47e3
  • 8.57e3
  • 1.02e4
  • 1.47e4
90.33
  • 90.33
  • 87.51
  • 85.44
  • 85.23
  • 82.40
  • 82.27
  • 81.92
  • 80.85
  • 79.77
  • 75.19
  • 73.03
  • 71.65
  • 71.30
  • 65.79
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
3.02e3
  • 3.02e3
  • 3.76e3
  • 5.78e3
  • 6.63e3
  • 1.39e4
89.90
  • 89.90
  • 87.41
  • 80.66
  • 77.80
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
3.20e3
  • 3.20e3
  • 4.39e3
  • 4.98e3
  • 5.10e3
  • 6.07e3
  • 6.09e3
  • 7.18e3
  • 8.47e3
  • 8.90e3
  • 9.26e3
89.28
  • 89.28
  • 85.31
  • 83.34
  • 82.93
  • 79.66
  • 79.60
  • 75.96
  • 71.64
  • 70.19
  • 69.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
  • 4.36e3
89.15
  • 89.15
  • 85.41
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.42e3
  • 4.42e3
  • 6.99e3
85.20
  • 85.20
  • 76.60
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.45e3
  • 4.45e3
85.10
  • 85.10
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
84.84
  • 84.84
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.53e3
  • 4.53e3
84.84
  • 84.84
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.04e3
  • 5.04e3
  • 5.33e3
  • 5.90e3
83.11
  • 83.11
  • 82.14
  • 80.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.05e3
  • 5.05e3
  • 5.09e3
83.11
  • 83.11
  • 82.95
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.06
  • 83.06
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.08e3
  • 5.08e3
82.99
  • 82.99
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.23e3
  • 5.23e3
  • 6.32e3
82.50
  • 82.50
  • 78.85
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.46e3
  • 5.46e3
81.72
  • 81.72
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.98e3
  • 5.98e3
79.97
  • 79.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.08e3
  • 6.08e3
79.65
  • 79.65
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.30e3
  • 6.30e3
78.89
  • 78.89
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
7.02e3
  • 7.02e3
  • 1.07e4
  • 1.07e4
  • 1.11e4
  • 1.12e4
76.48
  • 76.48
  • 64.10
  • 64.05
  • 62.82
  • 62.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.10e3
  • 7.10e3
76.24
  • 76.24
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.18e3
  • 7.18e3
75.98
  • 75.98
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.36e3
  • 7.36e3
75.37
  • 75.37
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.55e3
  • 7.55e3
74.72
  • 74.72
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.78e3
  • 7.78e3
73.95
  • 73.95
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
8.00e3
  • 8.00e3
  • 1.04e4
  • 1.05e4
  • 1.05e4
  • 1.10e4
  • 1.19e4
73.23
  • 73.23
  • 65.29
  • 64.88
  • 64.84
  • 63.15
  • 60.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.11e3
  • 8.11e3
72.86
  • 72.86
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.13e3
  • 8.13e3
72.77
  • 72.77
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.51e3
  • 8.51e3
71.52
  • 71.52
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.62e3
  • 8.62e3
71.13
  • 71.13
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.52
  • 64.52
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.09e4
  • 1.09e4
63.53
  • 63.53
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.89
  • 61.89
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
60.70
  • 60.70
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.18e4
  • 1.18e4
60.55
  • 60.55
AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.29e4
57.12
  • 57.12
  • 56.65
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
  • 1.37e4
55.24
  • 55.24
  • 54.15
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000030Pharyngula:Prim-15
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0005281ventricular system of central nervous system
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000060729.

Cross-references

EnsemblENSDARG00000060729 (trim8b)
ZFINZDB-GENE-030131-4325 (trim8b)
EMBLBC171664, BX279525, JX266664
Uniprot/SPTREMBLB7ZVP9, B7ZVP9_DANRE, F8W4W9, F8W4W9_DANRE

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