D. rerio Gene: smg7 - ENSDARG00000060767 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060767
Namesmg7
DescriptionSMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
OrganismDanio rerio (zebrafish)
Synonym(s)fa99h10, wu:fa99h10
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.95e3
  • 1.95e3
93.46
  • 93.46
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.51e3
  • 2.51e3
91.58
  • 91.58
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.98e3
  • 2.98e3
  • 1.14e4
  • 1.19e4
90.02
  • 90.02
  • 61.86
  • 60.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.20e3
  • 3.20e3
  • 3.65e3
  • 8.94e3
  • 1.06e4
  • 1.07e4
89.29
  • 89.29
  • 87.80
  • 70.08
  • 64.47
  • 64.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.85
  • 88.85
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
3.34e3
  • 3.34e3
  • 3.65e3
  • 4.99e3
  • 6.09e3
  • 6.34e3
  • 1.08e4
  • 1.21e4
  • 1.25e4
  • 1.33e4
  • 1.35e4
88.81
  • 88.81
  • 87.78
  • 83.30
  • 79.60
  • 78.78
  • 63.90
  • 59.41
  • 58.21
  • 55.49
  • 54.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.43e3
  • 3.43e3
  • 1.38e4
88.50
  • 88.50
  • 53.73
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
3.64e3
  • 3.64e3
  • 5.46e3
  • 8.32e3
  • 9.74e3
  • 9.99e3
  • 1.02e4
87.81
  • 87.81
  • 81.73
  • 72.15
  • 67.38
  • 66.56
  • 66.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.65e3
  • 3.65e3
  • 3.96e3
87.79
  • 87.79
  • 86.74
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.99e3
  • 3.99e3
  • 5.79e3
86.64
  • 86.64
  • 80.63
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000104life cycle
4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.53e3
  • 4.98e3
  • 5.22e3
  • 5.27e3
  • 5.27e3
  • 5.71e3
  • 5.77e3
  • 6.15e3
  • 6.25e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.92e3
  • 6.97e3
  • 6.98e3
  • 7.04e3
  • 7.36e3
  • 7.37e3
  • 7.39e3
  • 7.47e3
  • 7.47e3
  • 7.61e3
  • 8.62e3
  • 8.96e3
  • 8.96e3
  • 1.35e4
86.36
  • 86.36
  • 86.36
  • 86.36
  • 84.84
  • 83.33
  • 82.54
  • 82.37
  • 82.35
  • 80.88
  • 80.69
  • 79.40
  • 79.06
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.84
  • 76.66
  • 76.62
  • 76.42
  • 75.37
  • 75.33
  • 75.27
  • 74.99
  • 74.99
  • 74.52
  • 71.14
  • 69.99
  • 69.99
  • 54.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.18e3
  • 4.18e3
86.01
  • 86.01
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
85.49
  • 85.49
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.46e3
  • 4.46e3
85.08
  • 85.08
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.74e3
  • 4.74e3
84.14
  • 84.14
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.85e3
  • 4.85e3
83.75
  • 83.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.41
  • 83.41
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.12e3
  • 5.12e3
82.87
  • 82.87
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.45e3
  • 5.45e3
81.75
  • 81.75
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.64e3
  • 5.64e3
81.12
  • 81.12
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.13e3
  • 6.13e3
79.48
  • 79.48
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.11
  • 79.11
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.56e3
  • 6.56e3
78.04
  • 78.04
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
77.81
  • 77.81
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.70e3
  • 6.70e3
  • 8.43e3
  • 1.13e4
77.55
  • 77.55
  • 71.76
  • 62.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.35e3
  • 7.35e3
75.38
  • 75.38
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.27
  • 70.27
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.01e4
  • 1.01e4
66.28
  • 66.28
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.01e4
  • 1.01e4
66.14
  • 66.14
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.02e4
  • 1.02e4
65.96
  • 65.96
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.08e4
  • 1.08e4
63.86
  • 63.86
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.12e4
  • 1.12e4
62.36
  • 62.36
AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.80
  • 51.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000060767 (smg7)
ZFINZDB-GENE-030131-9122 (smg7)
EMBLBX681417
Uniprot/SPTREMBLQ1LVF3, Q1LVF3_DANRE

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