D. rerio Gene: trpc5b - ENSDARG00000060837 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060837
Nametrpc5b
Descriptiontransient receptor potential cation channel, subfamily C, member 5b [Source:ZFIN;Acc:ZDB-GENE-091112-24]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkeyp-81e1.5
Orthologs(s)19 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.41e3
  • 7.41e3
75.20
  • 75.20
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.01e4
  • 1.01e4
  • 1.29e4
66.25
  • 66.25
  • 56.72
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.04e4
  • 1.04e4
  • 1.19e4
  • 1.22e4
  • 1.36e4
65.25
  • 65.25
  • 59.99
  • 59.08
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.57
  • 63.57
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.14e4
  • 1.14e4
61.87
  • 61.87
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.16e4
  • 1.16e4
  • 1.36e4
61.10
  • 61.10
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.27
  • 58.27
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
  • 1.77e4
57.73
  • 57.73
  • 40.71
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.63
  • 57.63
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000033Hatching:Long-pec
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.46e4
  • 1.46e4
51.03
  • 51.03
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.29
  • 47.29
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.58e4
  • 1.58e4
  • 2.04e4
  • 2.20e4
47.05
  • 47.05
  • 31.57
  • 26.34
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.71
  • 45.71
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.77
  • 43.77
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.29
  • 42.29
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.87e4
  • 1.87e4
  • 2.26e4
37.38
  • 37.38
  • 24.20
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.70
  • 34.70
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Chordata9 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060837.

Cross-references

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