Gene: trim35-33 - ENSDARG00000060838 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000060838
Name	trim35-33
Description	tripartite motif containing 35-33 [Source:ZFIN;Acc:ZDB-GENE-081031-1]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:ch1073-352h10.2
Orthologs(s)	2 orthologs
Paralog(s)	28 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	3.62e3 3.62e3	87.87 87.87	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.08e4 1.08e4	63.95 63.95	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.15e4 1.15e4	61.51 61.51	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.16e4 1.16e4	61.17 61.17	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.19e4 1.19e4	60.11 60.11	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.20e4 1.20e4	59.79 59.79	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.32e4 1.32e4	55.66 55.66	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	1.44e4 1.44e4 1.51e4	51.73 51.73 49.42	AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000019Gastrula:Shield	1.50e4 1.50e4	49.92 49.92	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.90 49.90	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.62e4 1.62e4	45.81 45.81	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.65e4 1.65e4	44.64 44.64	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.70e4 1.70e4	43.16 43.16	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.70e4 1.70e4	43.08 43.08	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.70e4 1.70e4	43.00 43.00	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.81e4 1.81e4	39.32 39.32	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.87e4 1.87e4	37.52 37.52	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.06e4 2.06e4	31.15 31.15	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	2.09e4 2.09e4	29.93 29.93	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.13e4 2.13e4	28.75 28.75	AEIR AEIR
UBERON:0000922	embryo	[+] 3 stages UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000037Larval:Day 5	2.22e4 2.22e4 2.22e4 2.30e4	25.83 25.83 25.64 23.12	AEIR AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	2 species Ornithorhynchus anatinus (platypus) Anolis carolinensis (green anole)	2 genes ENSOANG00000010273 ENSACAG00000017194	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000060838.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	25 genes ENSDARG00000022271 trim35-34 ENSDARG00000031534 TRIM35 (1 to many) ENSDARG00000033071 trim35-10 ENSDARG00000039108 TRIM35 (1 to many) ENSDARG00000040230 TRIM35 (1 to many) ENSDARG00000052097 trim35-31 ENSDARG00000052255 trim35-3 ENSDARG00000055730 trim35-29 ENSDARG00000058958 TRIM35 (1 to many) ENSDARG00000070847 trim35-20 ENSDARG00000071241 trim35-39 ENSDARG00000092407 TRIM35 (1 to many) ENSDARG00000093859 TRIM35 (1 to many) ENSDARG00000095913 TRIM35 (1 to many) ENSDARG00000099639 trim35-19 ENSDARG00000099684 trim35-24 ENSDARG00000100373 TRIM35 (1 to many) ENSDARG00000100721 TRIM35 (1 to many) ENSDARG00000101055 trim35-25 ENSDARG00000102219 TRIM35 (1 to many) ENSDARG00000102264 trim35-22 ENSDARG00000102303 trim35-21 ENSDARG00000102368 trim35-23 ENSDARG00000103154 TRIM35 (1 to many) ENSDARG00000104825 trim35-7	Compare expression	[+]
Clupeocephala	26 genes ENSDARG00000016674 TRIM35 (1 to many) ENSDARG00000022271 trim35-34 ENSDARG00000031534 TRIM35 (1 to many) ENSDARG00000033071 trim35-10 ENSDARG00000039108 TRIM35 (1 to many) ENSDARG00000040230 TRIM35 (1 to many) ENSDARG00000052097 trim35-31 ENSDARG00000052255 trim35-3 ENSDARG00000055730 trim35-29 ENSDARG00000058958 TRIM35 (1 to many) ENSDARG00000070847 trim35-20 ENSDARG00000071241 trim35-39 ENSDARG00000092407 TRIM35 (1 to many) ENSDARG00000093859 TRIM35 (1 to many) ENSDARG00000095913 TRIM35 (1 to many) ENSDARG00000099639 trim35-19 ENSDARG00000099684 trim35-24 ENSDARG00000100373 TRIM35 (1 to many) ENSDARG00000100721 TRIM35 (1 to many) ENSDARG00000101055 trim35-25 ENSDARG00000102219 TRIM35 (1 to many) ENSDARG00000102264 trim35-22 ENSDARG00000102303 trim35-21 ENSDARG00000102368 trim35-23 ENSDARG00000103154 TRIM35 (1 to many) ENSDARG00000104825 trim35-7	Compare expression	[+]
Euteleostomi	28 genes ENSDARG00000016674 TRIM35 (1 to many) ENSDARG00000022271 trim35-34 ENSDARG00000031534 TRIM35 (1 to many) ENSDARG00000033071 trim35-10 ENSDARG00000039108 TRIM35 (1 to many) ENSDARG00000040230 TRIM35 (1 to many) ENSDARG00000042116 trim35-40 ENSDARG00000052097 trim35-31 ENSDARG00000052255 trim35-3 ENSDARG00000055730 trim35-29 ENSDARG00000058958 TRIM35 (1 to many) ENSDARG00000070847 trim35-20 ENSDARG00000071241 trim35-39 ENSDARG00000092407 TRIM35 (1 to many) ENSDARG00000093859 TRIM35 (1 to many) ENSDARG00000095913 TRIM35 (1 to many) ENSDARG00000099639 trim35-19 ENSDARG00000099684 trim35-24 ENSDARG00000100373 TRIM35 (1 to many) ENSDARG00000100721 TRIM35 (1 to many) ENSDARG00000101055 trim35-25 ENSDARG00000101264 trim35-12 ENSDARG00000102219 TRIM35 (1 to many) ENSDARG00000102264 trim35-22 ENSDARG00000102303 trim35-21 ENSDARG00000102368 trim35-23 ENSDARG00000103154 TRIM35 (1 to many) ENSDARG00000104825 trim35-7	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000060838.

Cross-references

Ensembl	ENSDARG00000060838 (trim35-33)
ZFIN	ZDB-GENE-081031-1 (trim35-33)
EMBL	CU539057, CU861903
Uniprot/SPTREMBL	F1R7D2, F1R7D2_DANRE