D. rerio Gene: col8a2 - ENSDARG00000060893 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060893
Namecol8a2
Descriptioncollagen, type VIII, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060503-488]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-197n10.4
Orthologs(s)16 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
611
  • 611
97.96
  • 97.96
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.49e3
  • 4.49e3
84.98
  • 84.98
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.69e3
  • 7.69e3
  • 1.95e4
74.25
  • 74.25
  • 34.65
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.53e3
  • 8.53e3
  • 1.62e4
71.45
  • 71.45
  • 45.88
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.33e3
  • 9.33e3
68.74
  • 68.74
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
9.49e3
  • 9.49e3
  • 1.43e4
  • 1.55e4
  • 1.56e4
  • 1.64e4
68.22
  • 68.22
  • 52.08
  • 48.20
  • 47.66
  • 45.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.99e3
  • 9.99e3
66.57
  • 66.57
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 1.53e4
  • 1.74e4
59.59
  • 59.59
  • 48.86
  • 41.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.61
  • 58.61
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.14
  • 56.14
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.29
  • 50.29
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.56
  • 48.56
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.00
  • 46.00
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.66
  • 41.66
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.78e4
  • 1.78e4
40.54
  • 40.54
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.16
  • 33.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060893.

Cross-references

EnsemblENSDARG00000060893 (col8a2)
ZFINZDB-GENE-060503-488 (col8a2)
EMBLBX957241
Uniprot/SPTREMBLQ1LUA9, Q1LUA9_DANRE

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