Gene: jarid2a - ENSDARG00000060925 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000060925
Name	jarid2a
Description	jumonji, AT rich interactive domain 2a [Source:ZFIN;Acc:ZDB-GENE-061218-1]
Organism	Danio rerio (zebrafish)
Synonym(s)	jarid2
Paralog(s)	1 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	4.41e3 4.41e3	85.24 85.24	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	7.50e3 7.50e3 9.11e3 1.11e4 1.13e4 1.18e4	74.88 74.88 69.49 62.85 62.32 60.47	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	8.57e3 8.57e3	71.31 71.31	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	9.02e3 9.02e3 1.12e4	69.80 69.80 62.66	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.11e4 1.11e4	62.72 62.72	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.13e4 1.13e4	62.04 62.04	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.15e4 1.15e4	61.54 61.54	AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	1.18e4 1.18e4	60.54 60.54	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	1.20e4 1.20e4	59.79 59.79	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.23e4 1.23e4 1.40e4	58.93 58.93 53.14	AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.26e4 1.26e4 1.53e4	57.85 57.85 48.84	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.39e4 1.39e4	53.59 53.59	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.39e4 1.39e4	53.49 53.49	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.41e4 1.41e4	52.78 52.78	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.42e4 1.42e4	52.30 52.30	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.86 49.86	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.55e4 1.55e4	48.20 48.20	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.70e4 1.70e4	43.23 43.23	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.81e4 1.81e4	39.37 39.37	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.82e4 1.82e4	38.97 38.97	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.97e4 1.97e4	34.03 34.03	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	2.02e4 2.02e4	32.44 32.44	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Vertebrata	1 gene ENSDARG00000062268 jarid2b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000060925.

Cross-references

Ensembl	ENSDARG00000060925 (jarid2a)
ZFIN	ZDB-GENE-061218-1 (jarid2a)
EMBL	CR391941
Uniprot/SPTREMBL	E7F6J7, E7F6J7_DANRE