D. rerio Gene: si:ch211-136a13.1 - ENSDARG00000060927 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000060927
Namesi:ch211-136a13.1
Descriptionsi:ch211-136a13.1 [Source:ZFIN;Acc:ZDB-GENE-050419-214]
OrganismDanio rerio (zebrafish)
Orthologs(s)1 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.84e3
  • 8.84e3
  • 1.83e4
70.40
  • 70.40
  • 38.76
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
9.86e3
  • 9.86e3
  • 1.06e4
  • 1.13e4
  • 1.46e4
  • 1.66e4
66.99
  • 66.99
  • 64.48
  • 62.14
  • 51.00
  • 44.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.08
  • 61.08
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.27
  • 60.27
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.22e4
  • 1.22e4
  • 1.88e4
59.07
  • 59.07
  • 37.13
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.72
  • 55.72
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.36e4
  • 1.36e4
54.57
  • 54.57
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.34
  • 54.34
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.65
  • 52.65
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.30
  • 49.30
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.32
  • 45.32
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.15
  • 44.15
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.26
  • 43.26
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.51
  • 41.51
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.77e4
  • 1.77e4
40.73
  • 40.73
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.45
  • 40.45
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.37
  • 39.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.22
  • 38.22
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
  • 1.90e4
36.75
  • 36.75
  • 36.23
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.11
  • 28.11
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000060927.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000060927.

Cross-references

EnsemblENSDARG00000060927 (si:ch211-136a13.1)
ZFINZDB-GENE-050419-214 (si:ch211-136a13.1)
EMBLBX663503
Uniprot/SPTREMBLQ1LVK0, Q1LVK0_DANRE

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