Gene: klhdc8a - ENSDARG00000061000 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000061000
Name	klhdc8a
Description	kelch domain containing 8A [Source:ZFIN;Acc:ZDB-GENE-120810-3]
Organism	Danio rerio (zebrafish)
Orthologs(s)	19 orthologs
Paralog(s)	2 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.03e4 1.03e4	65.60 65.60	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	1.08e4 1.08e4 1.32e4	63.75 63.75 55.67	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.18e4 1.18e4	60.57 60.57	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.37e4 1.37e4	54.19 54.19	AEIR AEIR
UBERON:0000922	embryo	[+] 4 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage UBERON:0004707pharyngula stage	1.47e4 1.47e4 1.62e4 1.98e4 2.26e4	50.65 50.65 45.66 33.65 24.38	AEIR AEIR AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.55e4 1.55e4 2.21e4	47.93 47.93 26.00	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.57e4 1.57e4	47.49 47.49	AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000019Gastrula:Shield	1.60e4 1.60e4	46.44 46.44	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.82e4 1.82e4	39.04 39.04	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.94e4 1.94e4	35.00 35.00	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	2.07e4 2.07e4 2.08e4	30.56 30.56 30.43	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.29e4 2.29e4	23.48 23.48	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	19 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000162873 KLHDC8A ENSMUSG00000042115 Klhdc8a ENSPTRG00000001898 KLHDC8A ENSGGOG00000003529 KLHDC8A ENSMMUG00000018585 KLHDC8A ENSRNOG00000000036 Klhdc8a ENSBTAG00000015197 KLHDC8A ENSSSCG00000023441 KLHDC8A ENSECAG00000015553 KLHDC8A ENSOCUG00000023010 KLHDC8A ENSCAFG00000010046 KLHDC8A ENSFCAG00000026726 KLHDC8A ENSCPOG00000020319 KLHDC8A ENSEEUG00000011156 KLHDC8A ENSMODG00000001778 KLHDC8A ENSOANG00000012776 ENSGALG00000000684 KLHDC8A ENSACAG00000014572 KLHDC8A ENSXETG00000000976 klhdc8a	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000061000.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	1 gene ENSDARG00000090787 klhdc8b	Compare expression	[+]
Eumetazoa	2 genes ENSDARG00000090787 klhdc8b ENSDARG00000101676 KLHL28	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000061000.

Cross-references

Ensembl	ENSDARG00000061000 (klhdc8a)
ZFIN	ZDB-GENE-120810-3 (klhdc8a)
Uniprot/SPTREMBL	E7FFI7, E7FFI7_DANRE