D. rerio Gene: cox11 - ENSDARG00000061004 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061004
Namecox11
Descriptioncytochrome c oxidase assembly homolog 11 (yeast) [Source:ZFIN;Acc:ZDB-GENE-050506-82]
OrganismDanio rerio (zebrafish)
Synonym(s)im:6904550, zgc:162286
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.23e3
  • 4.23e3
  • 1.47e4
85.82
  • 85.82
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
84.99
  • 84.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
4.61e3
  • 4.61e3
  • 9.35e3
  • 1.16e4
  • 1.21e4
  • 1.22e4
84.56
  • 84.56
  • 68.70
  • 61.05
  • 59.65
  • 59.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.52
  • 84.52
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.68e3
  • 4.68e3
84.32
  • 84.32
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.44e3
  • 5.44e3
  • 5.46e3
81.78
  • 81.78
  • 81.72
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
81.20
  • 81.20
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.69e3
  • 5.69e3
80.94
  • 80.94
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
5.85e3
  • 5.85e3
  • 7.30e3
  • 7.80e3
  • 8.51e3
  • 8.89e3
  • 9.13e3
  • 1.18e4
  • 1.32e4
  • 1.34e4
  • 1.35e4
80.43
  • 80.43
  • 75.56
  • 73.90
  • 71.51
  • 70.25
  • 69.45
  • 60.63
  • 55.91
  • 55.03
  • 54.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.94e3
  • 5.94e3
80.10
  • 80.10
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.10
  • 79.10
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
6.34e3
  • 6.34e3
  • 7.21e3
  • 8.63e3
  • 1.19e4
78.77
  • 78.77
  • 75.86
  • 71.12
  • 60.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.59e3
  • 6.59e3
77.92
  • 77.92
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.12e3
  • 7.12e3
76.18
  • 76.18
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
  • 1.07e4
75.79
  • 75.79
  • 64.03
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
7.26e3
  • 7.26e3
  • 7.85e3
  • 8.24e3
  • 8.29e3
  • 9.19e3
  • 9.43e3
  • 9.63e3
  • 9.72e3
  • 9.72e3
  • 9.79e3
  • 9.85e3
  • 1.04e4
  • 1.15e4
  • 1.20e4
  • 1.46e4
  • 1.49e4
75.70
  • 75.70
  • 73.70
  • 72.40
  • 72.25
  • 69.23
  • 68.42
  • 67.74
  • 67.47
  • 67.46
  • 67.23
  • 67.02
  • 65.31
  • 61.43
  • 59.84
  • 51.01
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.54e3
  • 7.54e3
74.77
  • 74.77
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.54e3
  • 7.54e3
74.76
  • 74.76
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.56e3
  • 7.56e3
74.69
  • 74.69
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.90e3
  • 7.90e3
73.55
  • 73.55
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.04e3
  • 8.04e3
  • 8.18e3
  • 9.20e3
73.07
  • 73.07
  • 72.62
  • 69.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.12e3
  • 8.12e3
72.82
  • 72.82
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.19e3
  • 8.19e3
  • 8.21e3
72.59
  • 72.59
  • 72.53
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
8.30e3
  • 8.30e3
  • 9.84e3
  • 1.13e4
  • 1.14e4
  • 1.14e4
  • 1.21e4
72.21
  • 72.21
  • 67.06
  • 62.11
  • 61.78
  • 61.68
  • 59.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.31e3
  • 8.31e3
72.19
  • 72.19
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.32e3
  • 8.32e3
72.14
  • 72.14
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.45e3
  • 8.45e3
71.69
  • 71.69
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.51e3
  • 8.51e3
71.51
  • 71.51
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
71.44
  • 71.44
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.58e3
  • 8.58e3
71.28
  • 71.28
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.62e3
  • 8.62e3
71.12
  • 71.12
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.04e4
  • 1.04e4
  • 1.50e4
65.34
  • 65.34
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
  • 1.17e4
61.36
  • 61.36
  • 60.79
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSDARG00000061004.

Cross-references

EnsemblENSDARG00000061004 (cox11)
ZFINZDB-GENE-050506-82 (cox11)
EMBLBC133933, CR385040
Uniprot/SPTREMBLA3KNN8, A3KNN8_DANRE, U3JAH2, U3JAH2_DANRE

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