D. rerio Gene: chst3a - ENSDARG00000061070 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061070
Namechst3a
Descriptioncarbohydrate (chondroitin 6) sulfotransferase 3a [Source:ZFIN;Acc:ZDB-GENE-090312-180]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-232k3.6
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
9.81e3
  • 9.81e3
67.17
  • 67.17
AEIR
  • AEIR
UBERON:0011004pharyngeal arch cartilage
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.12e4
62.50
  • 62.50
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.21e4
  • 1.21e4
  • 1.28e4
59.36
  • 59.36
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
1.29e4
  • 1.29e4
  • 1.39e4
56.79
  • 56.79
  • 53.41
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
  • 1.62e4
54.64
  • 54.64
  • 45.79
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.63
  • 54.63
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.42e4
  • 1.42e4
52.35
  • 52.35
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.45e4
  • 1.45e4
  • 1.48e4
  • 1.63e4
  • 1.75e4
  • 2.25e4
51.50
  • 51.50
  • 50.52
  • 45.55
  • 41.29
  • 24.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.36
  • 45.36
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.63e4
  • 1.63e4
  • 2.12e4
45.33
  • 45.33
  • 29.10
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.74
  • 37.74
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.51
  • 35.51
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.04
  • 32.04
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.61
  • 23.61
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.52
  • 23.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000061070.

Cross-references

EnsemblENSDARG00000061070 (chst3a)
ZFINZDB-GENE-090312-180 (chst3a)
EMBLBX855592
Uniprot/SPTREMBLB8A5X2, B8A5X2_DANRE, X1WBZ7, X1WBZ7_DANRE

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