D. rerio Gene: larp1b - ENSDARG00000061169 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061169
Namelarp1b
DescriptionLa ribonucleoprotein domain family, member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4154]
OrganismDanio rerio (zebrafish)
Synonym(s)fc76b04, wu:fc76b04
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.15e3
  • 1.15e3
96.15
  • 96.15
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.42e3
  • 1.42e3
95.23
  • 95.23
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.45e3
  • 1.45e3
95.15
  • 95.15
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.61e3
  • 1.61e3
94.62
  • 94.62
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
1.62e3
  • 1.62e3
  • 2.12e3
  • 3.18e3
  • 5.48e3
  • 5.92e3
94.59
  • 94.59
  • 92.92
  • 89.36
  • 81.67
  • 80.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.64e3
  • 1.64e3
94.53
  • 94.53
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.67e3
  • 1.67e3
94.40
  • 94.40
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
1.76e3
  • 1.76e3
  • 1.95e3
  • 2.06e3
  • 2.29e3
  • 2.30e3
  • 2.47e3
  • 3.15e3
  • 3.59e3
  • 4.71e3
  • 5.01e3
94.10
  • 94.10
  • 93.49
  • 93.10
  • 92.34
  • 92.32
  • 91.74
  • 89.47
  • 88.00
  • 84.22
  • 83.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
1.77e3
  • 1.77e3
  • 1.96e3
  • 2.02e3
  • 2.38e3
  • 2.46e3
  • 4.51e3
94.06
  • 94.06
  • 93.43
  • 93.23
  • 92.04
  • 91.78
  • 84.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.86e3
  • 1.86e3
93.79
  • 93.79
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.23e3
  • 2.23e3
  • 4.42e3
92.55
  • 92.55
  • 85.19
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.41e3
  • 2.41e3
91.94
  • 91.94
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.44e3
  • 2.44e3
  • 2.56e3
  • 2.62e3
  • 2.69e3
  • 2.72e3
  • 2.82e3
  • 3.04e3
  • 3.06e3
  • 3.25e3
  • 3.65e3
  • 3.65e3
  • 4.00e3
  • 4.07e3
  • 4.29e3
91.83
  • 91.83
  • 91.44
  • 91.24
  • 91.00
  • 90.91
  • 90.57
  • 89.84
  • 89.76
  • 89.12
  • 87.77
  • 87.77
  • 86.62
  • 86.39
  • 85.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
2.46e3
  • 2.46e3
91.75
  • 91.75
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.85e3
  • 2.85e3
90.45
  • 90.45
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
2.92e3
  • 2.92e3
  • 3.76e3
  • 3.82e3
90.23
  • 90.23
  • 87.42
  • 87.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.37e3
  • 3.37e3
88.72
  • 88.72
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.67
  • 88.67
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.47e3
  • 3.47e3
88.37
  • 88.37
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.55e3
  • 3.55e3
88.13
  • 88.13
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.55e3
  • 3.55e3
88.12
  • 88.12
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.05
  • 87.05
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.98e3
  • 3.98e3
86.68
  • 86.68
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.01e3
  • 4.01e3
  • 5.87e3
  • 9.10e3
  • 9.65e3
86.58
  • 86.58
  • 80.34
  • 69.54
  • 67.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.05e3
  • 4.05e3
  • 4.57e3
86.43
  • 86.43
  • 84.69
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.93e3
  • 4.93e3
83.51
  • 83.51
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.71e3
  • 6.71e3
  • 1.45e4
77.54
  • 77.54
  • 51.33
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.73e3
  • 6.73e3
77.46
  • 77.46
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.63e3
  • 7.63e3
  • 1.00e4
74.46
  • 74.46
  • 66.49
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.98e3
  • 7.98e3
73.27
  • 73.27
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000061169.

Cross-references

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