D. rerio Gene: vps45 - ENSDARG00000061180 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061180
Namevps45
Descriptionvacuolar protein sorting 45 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060503-526]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-200h23.3
Orthologs(s)25 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.89e3
  • 3.89e3
  • 1.00e4
86.99
  • 86.99
  • 66.46
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
4.26e3
  • 4.26e3
  • 5.67e3
  • 6.07e3
  • 7.07e3
  • 1.05e4
85.75
  • 85.75
  • 81.02
  • 79.67
  • 76.32
  • 64.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.83e3
  • 4.83e3
  • 5.30e3
  • 6.36e3
  • 6.74e3
83.83
  • 83.83
  • 82.27
  • 78.69
  • 77.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.53e3
  • 5.53e3
81.49
  • 81.49
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.77e3
  • 5.77e3
  • 7.71e3
80.69
  • 80.69
  • 74.19
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.81e3
  • 5.81e3
80.53
  • 80.53
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.11e3
  • 6.11e3
79.53
  • 79.53
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.50e3
  • 6.50e3
78.23
  • 78.23
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.85e3
  • 6.85e3
77.05
  • 77.05
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
6.88e3
  • 6.88e3
  • 7.51e3
  • 7.68e3
  • 8.60e3
  • 9.70e3
  • 9.75e3
  • 1.27e4
  • 1.28e4
  • 1.30e4
  • 1.31e4
76.96
  • 76.96
  • 74.85
  • 74.27
  • 71.22
  • 67.53
  • 67.35
  • 57.32
  • 57.03
  • 56.47
  • 56.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.11e3
  • 7.11e3
76.19
  • 76.19
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
  • UBERON:0000066fully formed stage
7.12e3
  • 7.12e3
  • 9.67e3
  • 9.77e3
  • 1.03e4
  • 1.05e4
  • 1.06e4
  • 1.06e4
  • 1.08e4
  • 1.09e4
  • 1.11e4
  • 1.12e4
  • 1.12e4
  • 1.18e4
  • 1.18e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
76.15
  • 76.15
  • 67.62
  • 67.28
  • 65.44
  • 64.76
  • 64.55
  • 64.39
  • 63.71
  • 63.42
  • 62.85
  • 62.49
  • 62.38
  • 60.46
  • 60.43
  • 50.20
  • 49.95
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.28e3
  • 7.28e3
75.61
  • 75.61
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.40e3
  • 7.40e3
75.22
  • 75.22
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.79e3
  • 7.79e3
  • 1.02e4
  • 1.06e4
73.92
  • 73.92
  • 65.76
  • 64.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.87e3
  • 7.87e3
73.65
  • 73.65
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.10e3
  • 8.10e3
72.90
  • 72.90
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.34e3
  • 8.34e3
72.09
  • 72.09
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.59e3
  • 8.59e3
71.24
  • 71.24
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.59e3
  • 8.59e3
71.23
  • 71.23
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.77e3
  • 8.77e3
70.63
  • 70.63
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
8.95e3
  • 8.95e3
  • 1.03e4
  • 1.06e4
  • 1.14e4
  • 1.23e4
  • 1.32e4
70.02
  • 70.02
  • 65.36
  • 64.53
  • 61.72
  • 58.78
  • 55.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.06e3
  • 9.06e3
69.66
  • 69.66
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.10e3
  • 9.10e3
69.52
  • 69.52
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.14e3
  • 9.14e3
69.40
  • 69.40
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.19e3
  • 9.19e3
69.22
  • 69.22
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.01e4
  • 1.01e4
66.33
  • 66.33
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.05e4
  • 1.05e4
64.91
  • 64.91
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.06e4
  • 1.06e4
64.39
  • 64.39
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
  • 1.18e4
60.88
  • 60.88
  • 60.53
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.17e4
  • 1.17e4
60.84
  • 60.84
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000061180.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000061180.

Cross-references

EnsemblENSDARG00000061180 (vps45)
ZFINZDB-GENE-060503-526 (vps45)
EMBLBX571688
Uniprot/SPTREMBLA8E7N5, A8E7N5_DANRE

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