D. rerio Gene: xylt1 - ENSDARG00000061248 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061248
Namexylt1
Descriptionxylosyltransferase I [Source:ZFIN;Acc:ZDB-GENE-111017-2]
OrganismDanio rerio (zebrafish)
Synonym(s)unm b1128, unm_b1128
Orthologs(s)24 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.94e3
  • 5.94e3
80.10
  • 80.10
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.37e3
  • 6.37e3
78.67
  • 78.67
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
7.75e3
  • 7.75e3
  • 1.28e4
74.05
  • 74.05
  • 57.18
AEIR
  • AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
62.49
  • 62.49
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
  • 1.33e4
  • 1.35e4
  • 1.37e4
  • 1.76e4
58.58
  • 58.58
  • 55.50
  • 54.71
  • 54.13
  • 41.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.09
  • 55.09
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.32
  • 52.32
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.45e4
  • 1.45e4
  • 1.80e4
51.44
  • 51.44
  • 39.60
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.45e4
  • 1.45e4
51.31
  • 51.31
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.45e4
  • 1.45e4
51.30
  • 51.30
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.40
  • 50.40
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.48e4
  • 1.48e4
  • 1.64e4
50.28
  • 50.28
  • 45.07
AEIR
  • AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011607hyomandibular cartilage
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000250opercle
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011242ethmoid cartilage
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0007390pectoral appendage cartilage tissue
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
  • 1.67e4
49.24
  • 49.24
  • 44.04
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
  • 1.90e4
47.65
  • 47.65
  • 36.48
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.51
  • 46.51
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.06
  • 46.06
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.02
  • 45.02
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.46
  • 38.46
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.76
  • 36.76
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.27
  • 36.27
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.51
  • 31.51
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.26
  • 28.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000061248.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000061248.

Cross-references

EnsemblENSDARG00000061248 (xylt1)
ZFINZDB-GENE-111017-2 (xylt1)
EMBLCR450821, CR847521, CR936402
Uniprot/SPTREMBLF1R0Z0, F1R0Z0_DANRE

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