D. rerio Gene: ddx6 - ENSDARG00000061338 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061338
Nameddx6
DescriptionDEAD (Asp-Glu-Ala-Asp) box helicase 6 [Source:ZFIN;Acc:ZDB-GENE-070912-83]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-147p17.1
Orthologs(s)26 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
642
  • 642
97.85
  • 97.85
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
1.35e3
  • 1.35e3
  • 1.40e3
  • 2.57e3
  • 2.80e3
  • 2.86e3
  • 3.26e3
  • 3.27e3
  • 3.82e3
  • 3.98e3
  • 6.25e3
  • 6.30e3
  • 6.31e3
  • 6.54e3
  • 6.86e3
95.49
  • 95.49
  • 95.32
  • 91.39
  • 90.62
  • 90.42
  • 89.09
  • 89.05
  • 87.20
  • 86.66
  • 79.08
  • 78.89
  • 78.88
  • 78.09
  • 77.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.89e3
  • 1.89e3
93.67
  • 93.67
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.95e3
  • 1.95e3
  • 3.60e3
  • 3.97e3
  • 8.11e3
93.46
  • 93.46
  • 87.93
  • 86.72
  • 72.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.22e3
  • 2.22e3
92.56
  • 92.56
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
2.42e3
  • 2.42e3
  • 2.70e3
  • 2.88e3
  • 3.64e3
  • 4.63e3
  • 6.77e3
  • 8.09e3
  • 9.36e3
  • 1.00e4
  • 1.25e4
91.90
  • 91.90
  • 90.98
  • 90.36
  • 87.82
  • 84.49
  • 77.34
  • 72.93
  • 68.64
  • 66.41
  • 58.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.07e3
  • 3.07e3
  • 5.64e3
  • 5.82e3
89.72
  • 89.72
  • 81.12
  • 80.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.37e3
  • 3.37e3
  • 3.57e3
88.71
  • 88.71
  • 88.03
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
3.80e3
  • 3.80e3
  • 4.46e3
  • 6.48e3
  • 6.84e3
  • 7.49e3
87.29
  • 87.29
  • 85.07
  • 78.29
  • 77.08
  • 74.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
  • 8.75e3
86.96
  • 86.96
  • 70.69
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.12e3
  • 4.12e3
86.20
  • 86.20
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.17e3
  • 4.17e3
86.05
  • 86.05
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.57e3
  • 4.57e3
84.70
  • 84.70
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
5.08e3
  • 5.08e3
  • 7.33e3
  • 7.70e3
  • 8.18e3
  • 8.37e3
  • 8.94e3
83.01
  • 83.01
  • 75.47
  • 74.23
  • 72.60
  • 71.96
  • 70.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.19e3
  • 5.19e3
  • 9.68e3
82.61
  • 82.61
  • 67.60
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.84e3
  • 5.84e3
80.44
  • 80.44
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.96e3
  • 5.96e3
80.04
  • 80.04
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
  • 7.66e3
79.22
  • 79.22
  • 74.35
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
76.31
  • 76.31
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.93e3
  • 7.93e3
73.45
  • 73.45
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.41e3
  • 8.41e3
71.85
  • 71.85
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.55e3
  • 8.55e3
71.38
  • 71.38
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.68e3
  • 8.68e3
70.92
  • 70.92
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.73e3
  • 8.73e3
70.76
  • 70.76
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
70.72
  • 70.72
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.83e3
  • 9.83e3
67.09
  • 67.09
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.88e3
  • 9.88e3
66.92
  • 66.92
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.85
  • 65.85
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.30
  • 62.30
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.94
  • 57.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000061338.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000061338.

Cross-references

EnsemblENSDARG00000061338 (ddx6)
ZFINZDB-GENE-070912-83 (ddx6)
Uniprot/SPTREMBLE7FD91, E7FD91_DANRE

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