Gene: klf13 - ENSDARG00000061368 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000061368
Name	klf13
Description	Kruppel-like factor 13 [Source:ZFIN;Acc:ZDB-GENE-060929-1274]
Organism	Danio rerio (zebrafish)
Synonym(s)	klf13l, zgc:152886
Orthologs(s)	7 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	2.33e3 2.33e3	92.19 92.19	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	3.12e3 3.12e3	89.56 89.56	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	3.52e3 3.52e3 1.37e4	88.22 88.22 54.12	AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	4.46e3 4.46e3	85.09 85.09	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	4.58e3 4.58e3	84.67 84.67	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	5.09e3 5.09e3	82.95 82.95	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5	5.56e3 5.56e3 1.18e4 1.42e4 1.52e4 1.63e4	81.38 81.38 60.41 52.43 49.09 45.37	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	6.22e3 6.22e3	79.17 79.17	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	6.37e3 6.37e3	78.67 78.67	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	6.80e3 6.80e3	77.24 77.24	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	7.71e3 7.71e3 1.19e4	74.18 74.18 60.12	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.96e3 7.96e3	73.36 73.36	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	7.96e3 7.96e3	73.35 73.35	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	8.58e3 8.58e3	71.27 71.27	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	8.65e3 8.65e3	71.05 71.05	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	8.68e3 8.68e3	70.95 70.95	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.13e4 1.13e4	62.31 62.31	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.14e4 1.14e4	61.67 61.67	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.42e4 1.42e4 1.80e4	52.51 52.51 39.63	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.44e4 1.44e4	51.71 51.71	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	1.47e4 1.47e4 1.53e4	50.83 50.83 48.72	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.52e4 1.52e4 1.85e4	49.03 49.03 37.90	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.59e4 1.59e4	46.93 46.93	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	7 species Homo sapiens (human) Mus musculus (mouse) Gorilla gorilla (gorilla) Sus scrofa (pig) Oryctolagus cuniculus (rabbit) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog)	7 genes ENSG00000169926 KLF13 ENSMUSG00000052040 Klf13 ENSGGOG00000007907 KLF13 ENSSSCG00000026006 KLF13 ENSOCUG00000011101 KLF13 ENSGALG00000026590 KLF13 ENSXETG00000016478 klf13	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000061368.

Cross-references

Ensembl	ENSDARG00000061368 (klf13)
ZFIN	ZDB-GENE-060929-1274 (klf13)
EMBL	BX323824
Uniprot/SPTREMBL	F1RBH0, F1RBH0_DANRE