D. rerio Gene: cdh18a - ENSDARG00000061371 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061371
Namecdh18a
Descriptioncadherin 18, type 2a [Source:ZFIN;Acc:ZDB-GENE-060929-316]
OrganismDanio rerio (zebrafish)
Synonym(s)cdh18, cdh18 {eco:0000313|embl:aai24377.1,gn eco:0000313|ensembl:ensdarp00000089931}, zgc:153531
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.45e3
  • 6.45e3
  • 6.81e3
  • 1.18e4
  • 1.37e4
78.42
  • 78.42
  • 77.19
  • 60.43
  • 54.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.36e3
  • 7.36e3
  • 1.38e4
75.35
  • 75.35
  • 53.84
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.19e3
  • 9.19e3
69.23
  • 69.23
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000104life cycle
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
9.85e3
  • 9.85e3
  • 1.25e4
  • 1.27e4
  • 1.43e4
  • 1.50e4
  • 1.52e4
  • 1.54e4
  • 1.56e4
  • 1.60e4
  • 1.62e4
67.02
  • 67.02
  • 58.21
  • 57.41
  • 52.27
  • 49.92
  • 49.00
  • 48.56
  • 47.65
  • 46.41
  • 45.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.90e3
  • 9.90e3
  • 1.20e4
  • 1.23e4
66.84
  • 66.84
  • 59.97
  • 58.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.03e4
  • 1.03e4
65.38
  • 65.38
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.19
  • 63.19
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
1.11e4
  • 1.11e4
  • 1.27e4
  • 1.35e4
  • 1.40e4
  • 1.41e4
  • 1.62e4
  • 1.71e4
  • 1.76e4
62.68
  • 62.68
  • 57.50
  • 54.83
  • 53.08
  • 52.85
  • 45.80
  • 42.77
  • 40.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.39
  • 57.39
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.29e4
  • 1.29e4
56.76
  • 56.76
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.32e4
  • 1.32e4
  • 1.37e4
  • 1.52e4
55.64
  • 55.64
  • 54.08
  • 49.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.42e4
  • 1.42e4
  • 1.68e4
52.30
  • 52.30
  • 43.74
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
  • 1.76e4
51.44
  • 51.44
  • 41.11
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.47e4
  • 1.47e4
50.82
  • 50.82
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.96e4
49.92
  • 49.92
  • 34.46
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.92
  • 48.92
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.85
  • 44.85
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.79
  • 44.79
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.59
  • 42.59
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.31
  • 41.31
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.86
  • 39.86
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.43
  • 39.43
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.05
  • 38.05
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.73
  • 28.73
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.30e4
  • 2.30e4
22.82
  • 22.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata9 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000061371.

Cross-references

EnsemblENSDARG00000061371 (cdh18a)
ZFINZDB-GENE-060929-316 (cdh18a)
EMBLBC124376, BC164912, BX088561
Uniprot/SPTREMBLB0S5D7, B0S5D7_DANRE, Q08C62, Q08C62_DANRE

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