Gene: smg8 - ENSDARG00000061378 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000061378
Name	smg8
Description	SMG8 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-091204-279]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:ch211-168p1.3
Orthologs(s)	26 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	5.45e3 5.45e3	81.76 81.76	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	5.46e3 5.46e3 6.51e3	81.71 81.71 78.21	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	6.84e3 6.84e3	77.09 77.09	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	6.94e3 6.94e3 8.12e3	76.78 76.78 72.83	AEIR AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	7.20e3 7.20e3	75.91 75.91	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	7.24e3 7.24e3	75.75 75.75	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	7.32e3 7.32e3	75.50 75.50	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	7.71e3 7.71e3	74.20 74.20	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	7.77e3 7.77e3	74.00 74.00	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	7.85e3 7.85e3	73.72 73.72	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	8.22e3 8.22e3	72.49 72.49	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	8.22e3 8.22e3	72.49 72.49	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	8.26e3 8.26e3	72.35 72.35	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	8.52e3 8.52e3	71.48 71.48	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	8.57e3 8.57e3	71.30 71.30	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	8.71e3 8.71e3 9.05e3 9.73e3 1.02e4 1.12e4	70.83 70.83 69.69 67.43 65.91 62.41	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	8.73e3 8.73e3	70.79 70.79	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	8.92e3 8.92e3	70.12 70.12	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	9.00e3 9.00e3 1.33e4	69.87 69.87 55.57	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	9.10e3 9.10e3 9.36e3	69.53 69.53 68.65	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	9.11e3 9.11e3 1.00e4	69.49 69.49 66.52	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	9.13e3 9.13e3	69.44 69.44	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	9.40e3 9.40e3	68.51 68.51	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.07e4 1.07e4	64.31 64.31	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.09e4 1.09e4	63.45 63.45	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	19 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000167447 SMG8 ENSMUSG00000020495 Smg8 ENSPTRG00000009465 SMG8 ENSGGOG00000002998 SMG8 ENSMMUG00000003391 SMG8 ENSRNOG00000005769 Smg8 ENSBTAG00000003365 SMG8 ENSSSCG00000024411 SMG8 ENSECAG00000015244 SMG8 ENSOCUG00000002350 SMG8 ENSCAFG00000017590 SMG8 ENSFCAG00000013335 SMG8 ENSCPOG00000002768 SMG8 ENSEEUG00000004305 SMG8 ENSMODG00000014605 ENSOANG00000008508 ENSGALG00000005093 ENSACAG00000013600 ENSXETG00000001117 smg8	Compare expression	[+]
Bilateria	26 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	26 genes ENSG00000167447 SMG8 ENSMUSG00000020495 Smg8 FBgn0032296 CG6729 WBGene00010551 smg-8 ENSPTRG00000009465 SMG8 ENSGGOG00000002998 SMG8 ENSMMUG00000003391 SMG8 ENSRNOG00000005769 Smg8 ENSBTAG00000003365 SMG8 ENSSSCG00000024411 SMG8 ENSECAG00000015244 SMG8 ENSOCUG00000002350 SMG8 ENSCAFG00000017590 SMG8 ENSFCAG00000013335 SMG8 ENSCPOG00000002768 SMG8 ENSEEUG00000004305 SMG8 ENSMODG00000014605 ENSOANG00000008508 ENSGALG00000005093 ENSACAG00000013600 ENSXETG00000001117 smg8 FBgn0091097 GF14070 FBgn0140558 GI17817 FBgn0193638 GD22229 FBgn0204814 GJ17645 FBgn0231051 GE13372	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000061378.

Cross-references

Ensembl	ENSDARG00000061378 (smg8)
ZFIN	ZDB-GENE-091204-279 (smg8)
EMBL	CT030221
Uniprot/SPTREMBL	E7FBA3, E7FBA3_DANRE