D. rerio Gene: grhl1 - ENSDARG00000061391 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061391
Namegrhl1
Descriptiongrainyhead-like transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3665]
OrganismDanio rerio (zebrafish)
Synonym(s)fc49a04, wu:fc49a04
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.13e3
  • 1.13e3
96.20
  • 96.20
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.14e3
  • 1.14e3
96.18
  • 96.18
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
1.67e3
  • 1.67e3
  • 4.98e3
  • 1.46e4
94.42
  • 94.42
  • 83.34
  • 51.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
2.41e3
  • 2.41e3
  • 3.73e3
91.94
  • 91.94
  • 87.50
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
2.90e3
  • 2.90e3
  • 4.31e3
  • 4.82e3
  • 4.92e3
  • 6.32e3
90.30
  • 90.30
  • 85.58
  • 83.86
  • 83.54
  • 78.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000035Larval:Protruding-mouth
2.99e3
  • 2.99e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
90.00
  • 90.00
  • 75.00
  • 75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
3.07e3
  • 3.07e3
  • 1.76e4
89.73
  • 89.73
  • 40.99
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.80e3
  • 4.80e3
  • 6.61e3
83.94
  • 83.94
  • 77.88
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.43e3
  • 5.43e3
81.81
  • 81.81
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.51e3
  • 5.51e3
81.56
  • 81.56
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
5.77e3
  • 5.77e3
  • 7.03e3
  • 9.96e3
  • 1.22e4
  • 1.24e4
  • 1.44e4
  • 1.46e4
80.67
  • 80.67
  • 76.46
  • 66.65
  • 59.08
  • 58.32
  • 51.88
  • 51.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.42e3
  • 6.42e3
  • 1.00e4
78.50
  • 78.50
  • 66.53
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.15e3
  • 7.15e3
76.05
  • 76.05
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.70e3
  • 7.70e3
74.23
  • 74.23
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.17
  • 65.17
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.36
  • 64.36
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.15
  • 64.15
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.40
  • 62.40
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.38
  • 58.38
AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.27e4
  • 1.27e4
57.56
  • 57.56
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.85
  • 56.85
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.34e4
  • 1.34e4
  • 1.41e4
54.97
  • 54.97
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.96
  • 54.96
AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.80
  • 51.80
AEIR
  • AEIR
CL:0000362epidermal cell
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001707nasal cavity
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002025stratum basale of epidermis
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
ZFA:0005325integument ionocyte (Danio)
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.58
  • 49.58
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.65e4
  • 1.65e4
44.85
  • 44.85
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.13
  • 41.13
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.05
  • 32.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

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