D. rerio Gene: znf646p - ENSDARG00000061424 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061424
Nameznf646p
Descriptionzinc finger protein 646, pseudogene [Source:ZFIN;Acc:ZDB-GENEP-040724-6]
OrganismDanio rerio (zebrafish)
Synonym(s)si:rp71-1c10.2 pseudogene, si:rp71-1c10.2p

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
4.59e3
  • 4.59e3
  • 6.75e3
84.62
  • 84.62
  • 77.41
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
4.66e3
  • 4.66e3
84.41
  • 84.41
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.20e3
  • 5.20e3
  • 5.87e3
82.58
  • 82.58
  • 80.35
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.51e3
  • 5.51e3
81.56
  • 81.56
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
6.05e3
  • 6.05e3
  • 7.47e3
  • 8.21e3
  • 9.53e3
  • 9.89e3
79.74
  • 79.74
  • 74.98
  • 72.52
  • 68.09
  • 66.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.36e3
  • 7.36e3
75.35
  • 75.35
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.65e3
  • 7.65e3
74.38
  • 74.38
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.02e3
  • 8.02e3
  • 1.06e4
73.14
  • 73.14
  • 64.53
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.44e3
  • 8.44e3
71.74
  • 71.74
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.47e3
  • 8.47e3
71.65
  • 71.65
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.56e3
  • 8.56e3
  • 1.02e4
71.34
  • 71.34
  • 65.92
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.99e3
  • 8.99e3
69.90
  • 69.90
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
69.73
  • 69.73
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.18e3
  • 9.18e3
69.25
  • 69.25
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.25e3
  • 9.25e3
  • 9.27e3
69.03
  • 69.03
  • 68.96
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.54e3
  • 9.54e3
68.05
  • 68.05
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.60e3
  • 9.60e3
67.85
  • 67.85
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.71e3
  • 9.71e3
67.50
  • 67.50
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.79e3
  • 9.79e3
67.24
  • 67.24
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.65
  • 65.65
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.03
  • 65.03
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.26
  • 64.26
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.57
  • 60.57
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.67
  • 58.67
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.18
  • 58.18
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000061424 (znf646p)
ZFINZDB-GENEP-040724-6 (znf646p)
EMBLAL732488
Uniprot/SPTREMBLU3JA35, U3JA35_DANRE, U3JB44, U3JB44_DANRE

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