D. rerio Gene: sema5ba - ENSDARG00000061471 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061471
Namesema5ba
Descriptionsema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba [Source:ZFIN;Acc:ZDB-GENE-070912-187]
OrganismDanio rerio (zebrafish)
Synonym(s)sema5b, si:ch211-208i8.1
Orthologs(s)23 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.71e3
  • 8.71e3
70.83
  • 70.83
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
9.63e3
  • 9.63e3
  • 1.03e4
  • 1.28e4
  • 1.34e4
  • 1.47e4
67.76
  • 67.76
  • 65.45
  • 57.02
  • 55.28
  • 50.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.15e4
  • 1.15e4
  • 1.56e4
61.53
  • 61.53
  • 47.85
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.67
  • 58.67
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.81
  • 50.81
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.48e4
  • 1.48e4
  • 1.72e4
50.35
  • 50.35
  • 42.44
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.51e4
  • 1.51e4
  • 1.89e4
49.41
  • 49.41
  • 36.74
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.53e4
  • 1.53e4
48.70
  • 48.70
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.50
  • 46.50
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.66
  • 45.66
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.15
  • 42.15
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.72
  • 41.72
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.78e4
  • 1.78e4
40.48
  • 40.48
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.07
  • 35.07
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.69
  • 32.69
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.19
  • 31.19
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.07
  • 31.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000061471.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000061471.

Cross-references

EnsemblENSDARG00000061471 (sema5ba)
ZFINZDB-GENE-070912-187 (sema5ba)
EMBLBX294387, BX322793, BX324147
Uniprot/SPTREMBLF1QPQ6, F1QPQ6_DANRE, F1R7S5, F1R7S5_DANRE

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