D. rerio Gene: igf2bp1 - ENSDARG00000061478 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061478
Nameigf2bp1
Descriptioninsulin-like growth factor 2 mRNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1258]
OrganismDanio rerio (zebrafish)
Synonym(s)crdbp, fb96d05, imp1, wu:fb18f03, wu:fb96d05, wu:fi72a06, zgc:152963
Orthologs(s)23 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
211
  • 211
  • 475
  • 557
99.30
  • 99.30
  • 98.41
  • 98.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
296
  • 296
99.01
  • 99.01
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
364
  • 364
  • 404
  • 578
  • 647
  • 684
  • 756
  • 796
  • 851
  • 1.30e3
  • 2.47e3
98.78
  • 98.78
  • 98.65
  • 98.07
  • 97.84
  • 97.71
  • 97.47
  • 97.34
  • 97.15
  • 95.67
  • 91.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
453
  • 453
98.49
  • 98.49
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
456
  • 456
98.47
  • 98.47
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:00072334 cell stage
  • UBERON:0000106zygote stage
508
  • 508
  • 539
  • 667
  • 747
  • 828
  • 921
  • 1.09e3
  • 1.16e3
  • 1.59e3
  • 1.78e3
  • 1.80e3
  • 2.04e3
  • 4.67e3
  • 4.98e3
  • 6.79e3
  • 7.93e3
98.30
  • 98.30
  • 98.20
  • 97.77
  • 97.50
  • 97.23
  • 96.92
  • 96.34
  • 96.14
  • 94.69
  • 94.04
  • 93.99
  • 93.19
  • 84.37
  • 83.33
  • 77.27
  • 73.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
624
  • 624
  • 666
  • 717
  • 1.06e3
  • 1.43e3
  • 2.02e3
97.91
  • 97.91
  • 97.77
  • 97.60
  • 96.45
  • 95.21
  • 93.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
712
  • 712
97.62
  • 97.62
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
827
  • 827
  • 1.97e4
97.23
  • 97.23
  • 33.90
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.09e3
  • 1.09e3
96.36
  • 96.36
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.26e3
  • 1.26e3
  • 1.30e3
  • 2.39e3
95.77
  • 95.77
  • 95.64
  • 91.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.94e3
  • 1.94e3
  • 1.33e4
93.52
  • 93.52
  • 55.35
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
2.06e3
  • 2.06e3
  • 1.12e4
  • 1.49e4
93.11
  • 93.11
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.05e3
  • 3.05e3
  • 4.53e3
  • 6.39e3
  • 9.85e3
  • 1.02e4
89.78
  • 89.78
  • 84.82
  • 78.60
  • 67.02
  • 66.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.45e3
  • 5.45e3
81.75
  • 81.75
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.59e3
  • 5.59e3
81.30
  • 81.30
AEIR
  • AEIR
UBERON:0001795inner plexiform layer of retina
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.85e3
  • 9.85e3
67.01
  • 67.01
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.72
  • 59.72
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.16
  • 52.16
AEIR
  • AEIR
UBERON:0000941cranial nerve II
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001908optic tract
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.27
  • 48.27
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.17
  • 48.17
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
43.92
  • 43.92
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.24
  • 42.24
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.47
  • 39.47
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.43
  • 37.43
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.92
  • 33.92
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.80
  • 33.80
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.77
  • 33.77
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.71
  • 33.71
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000061478.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000061478.

Cross-references

EnsemblENSDARG00000061478 (igf2bp1)
ZFINZDB-GENE-060929-1258 (igf2bp1)
EMBLBX682553, BX682558
Uniprot/SPTREMBLA0A0B4J1A6, A0A0B4J1A6_DANRE, X1WC53, X1WC53_DANRE

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