D. rerio Gene: thsd7aa - ENSDARG00000061479 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061479
Namethsd7aa
Descriptionthrombospondin, type I, domain containing 7Aa [Source:ZFIN;Acc:ZDB-GENE-060503-709]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-12h3.1, thsd7a
Orthologs(s)20 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000025Segmentation:10-13 somites
6.54e3
  • 6.54e3
78.12
  • 78.12
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
7.29e3
  • 7.29e3
  • 1.29e4
75.58
  • 75.58
  • 56.79
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
7.87e3
  • 7.87e3
  • 8.22e3
  • 1.20e4
  • 1.28e4
  • 1.48e4
73.64
  • 73.64
  • 72.49
  • 59.85
  • 57.28
  • 50.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
1.01e4
  • 1.01e4
  • 1.34e4
66.05
  • 66.05
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
60.70
  • 60.70
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.24e4
  • 1.24e4
58.42
  • 58.42
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
  • 1.54e4
58.16
  • 58.16
  • 48.34
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
1.28e4
  • 1.28e4
  • 1.39e4
  • 1.41e4
57.13
  • 57.13
  • 53.55
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
  • 1.34e4
56.79
  • 56.79
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.30e4
  • 1.30e4
  • 1.42e4
56.49
  • 56.49
  • 52.47
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000033Hatching:Long-pec
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000033Hatching:Long-pec
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.39e4
  • 1.39e4
  • 1.75e4
53.45
  • 53.45
  • 41.50
AEIR
  • AEIR
  • AEIR
CL:0000533primary motor neuron
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.74
  • 46.74
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.67e4
  • 1.67e4
43.92
  • 43.92
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.02
  • 38.02
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.31
  • 32.31
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.80
  • 31.80
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.68
  • 29.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
25.12
  • 25.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000061479.

Cross-references

EnsemblENSDARG00000061479 (thsd7aa)
ZFINZDB-GENE-060503-709 (thsd7aa)
Uniprot/SPTREMBLF1QPE6, F1QPE6_DANRE

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