Gene: slc7a3b - ENSDARG00000061566 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000061566
Name	slc7a3b
Description	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3b [Source:ZFIN;Acc:ZDB-GENE-120813-6]
Organism	Danio rerio (zebrafish)
Orthologs(s)	16 orthologs
Paralog(s)	17 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	4.45e3 4.45e3	85.10 85.10	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	7.97e3 7.97e3	73.33 73.33	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	8.05e3 8.05e3 1.24e4	73.05 73.05 58.56	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	8.08e3 8.08e3	72.94 72.94	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	8.24e3 8.24e3	72.41 72.41	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	9.25e3 9.25e3	69.04 69.04	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	9.69e3 9.69e3	67.57 67.57	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	9.76e3 9.76e3 1.08e4	67.33 67.33 63.69	AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	9.84e3 9.84e3	67.06 67.06	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.03e4 1.03e4	65.42 65.42	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	1.04e4 1.04e4 1.25e4	65.03 65.03 58.12	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec	1.11e4 1.11e4 1.28e4 1.33e4 1.57e4 1.75e4	62.78 62.78 57.22 55.35 47.51 41.28	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.12e4 1.12e4	62.37 62.37	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.13e4 1.13e4	62.18 62.18	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.16e4 1.16e4	61.25 61.25	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.74 60.74	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.29e4 1.29e4	56.89 56.89	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000015Blastula:Dome	1.30e4 1.30e4	56.40 56.40	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.36e4 1.36e4	54.49 54.49	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.51e4 1.51e4	49.40 49.40	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.57e4 1.57e4 1.64e4	47.49 47.49 45.21	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.63e4 1.63e4	45.30 45.30	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	43.93 43.93	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	16 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	16 genes ENSG00000165349 SLC7A3 ENSMUSG00000031297 Slc7a3 ENSPTRG00000022002 SLC7A3 ENSGGOG00000001116 SLC7A3 ENSMMUG00000003274 SLC7A3 ENSRNOG00000004133 Slc7a3 ENSECAG00000020612 SLC7A3 ENSOCUG00000010551 SLC7A3 ENSCAFG00000016908 ENSFCAG00000011209 ENSCPOG00000005002 SLC7A3 ENSEEUG00000010165 SLC7A3 ENSMODG00000005060 SLC7A3 ENSGALG00000005727 SLC7A3 ENSACAG00000004018 SLC7A3 ENSXETG00000005526 slc7a3	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000061566.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Euteleostomi	1 gene ENSDARG00000020645 slc7a3a	Compare expression	[+]
Chordata	4 genes ENSDARG00000016439 slc7a1 ENSDARG00000020645 slc7a3a ENSDARG00000037097 slc7a2 ENSDARG00000100227 SLC7A1 (1 to many)	Compare expression	[+]
Bilateria	5 genes ENSDARG00000016439 slc7a1 ENSDARG00000020645 slc7a3a ENSDARG00000037097 slc7a2 ENSDARG00000099111 zgc:175280 ENSDARG00000100227 SLC7A1 (1 to many)	Compare expression	[+]
Opisthokonta	17 genes ENSDARG00000005894 slc7a9 ENSDARG00000008100 slc7a10a ENSDARG00000016439 slc7a1 ENSDARG00000020278 si:dkeyp-120h9.1 ENSDARG00000020645 slc7a3a ENSDARG00000037097 slc7a2 ENSDARG00000040610 si:ch73-352p4.8 ENSDARG00000051730 slc7a10b ENSDARG00000054343 SLC7A8 (1 to many) ENSDARG00000054423 slc7a6 ENSDARG00000055226 slc7a7 ENSDARG00000071384 slc7a11 ENSDARG00000075831 slc7a8a ENSDARG00000089192 FQ377906.1 ENSDARG00000099111 zgc:175280 ENSDARG00000099265 slc7a5 ENSDARG00000100227 SLC7A1 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000061566.

Cross-references

Ensembl	ENSDARG00000061566 (slc7a3b)
ZFIN	ZDB-GENE-120813-6 (slc7a3b)
Uniprot/SPTREMBL	F1QNI7, F1QNI7_DANRE