D. rerio Gene: zgc:162707 - ENSDARG00000061664 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061664
Namezgc:162707
Descriptionzgc:162707 [Source:ZFIN;Acc:ZDB-GENE-070424-37]
OrganismDanio rerio (zebrafish)
Synonym(s)a9c3v9, a9c3w0
Orthologs(s)15 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
  • 1.30e4
  • 1.45e4
92.08
  • 92.08
  • 56.35
  • 51.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.68e3
  • 3.68e3
  • 1.00e4
87.68
  • 87.68
  • 66.51
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.74
  • 85.74
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
7.45e3
  • 7.45e3
  • 1.11e4
  • 1.42e4
  • 1.42e4
  • 1.45e4
  • 1.47e4
  • 1.47e4
  • 1.49e4
  • 1.51e4
75.05
  • 75.05
  • 62.67
  • 52.45
  • 52.40
  • 51.53
  • 50.74
  • 50.68
  • 50.06
  • 49.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.59e3
  • 8.59e3
71.25
  • 71.25
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.93e3
  • 9.93e3
  • 1.28e4
66.76
  • 66.76
  • 57.01
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.59
  • 66.59
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.02e4
  • 1.02e4
  • 1.15e4
65.86
  • 65.86
  • 61.48
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.03e4
  • 1.03e4
  • 1.15e4
  • 1.49e4
65.35
  • 65.35
  • 61.37
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.05e4
  • 1.05e4
64.72
  • 64.72
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.12e4
  • 1.12e4
62.52
  • 62.52
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.17e4
  • 1.17e4
  • 1.41e4
  • 1.45e4
60.69
  • 60.69
  • 52.73
  • 51.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.52
  • 59.52
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.33
  • 57.33
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.31
  • 52.31
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.44e4
  • 1.44e4
51.87
  • 51.87
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.48e4
  • 1.48e4
  • 1.52e4
  • 1.67e4
50.53
  • 50.53
  • 49.26
  • 44.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.43
  • 50.43
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
  • 1.59e4
  • 1.60e4
  • 1.71e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
50.20
  • 50.20
  • 46.64
  • 46.54
  • 42.86
  • 40.62
  • 40.56
  • 40.38
  • 40.34
  • 40.18
  • 39.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.60
  • 49.60
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.20
  • 49.20
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.00
  • 49.00
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.63
  • 48.63
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.85
  • 46.85
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.62
  • 39.62
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.61
  • 38.61
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.63
  • 37.63
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.26
  • 33.26
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.25
  • 25.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000061664.

Cross-references

EnsemblENSDARG00000061664 (zgc:162707)
ZFINZDB-GENE-070424-37 (zgc:162707)
EMBLBC134060, CR936497
Uniprot/SPTREMBLZ4YID7, Z4YID7_DANRE
Uniprot/SWISSPROTA3KNX6, CC70B_DANRE

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