D. rerio Gene: arhgef9a - ENSDARG00000061746 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061746
Namearhgef9a
DescriptionCdc42 guanine nucleotide exchange factor (GEF) 9a [Source:ZFIN;Acc:ZDB-GENE-070705-271]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch73-92i20.3, si:cu137718.3
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
1.54e3
  • 1.54e3
  • 4.98e3
  • 5.97e3
  • 6.22e3
  • 6.79e3
  • 6.97e3
  • 7.47e3
  • 9.13e3
94.85
  • 94.85
  • 83.33
  • 80.00
  • 79.16
  • 77.27
  • 76.66
  • 74.99
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.61
  • 92.61
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
2.91e3
  • 2.91e3
90.27
  • 90.27
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.74e3
  • 4.74e3
  • 4.93e3
84.12
  • 84.12
  • 83.50
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
6.88e3
  • 6.88e3
  • 9.21e3
  • 1.37e4
  • 1.52e4
  • 1.65e4
76.96
  • 76.96
  • 69.15
  • 54.27
  • 48.97
  • 44.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.02e4
  • 1.02e4
  • 1.69e4
65.97
  • 65.97
  • 43.32
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.05e4
  • 1.05e4
  • 1.41e4
64.96
  • 64.96
  • 52.76
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.85
  • 60.85
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.25
  • 56.25
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.84
  • 55.84
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
55.29
  • 55.29
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.08
  • 52.08
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.92
  • 50.92
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.48
  • 46.48
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.30
  • 45.30
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.64e4
  • 1.64e4
45.09
  • 45.09
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.71e4
  • 1.71e4
42.80
  • 42.80
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.35
  • 40.35
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.35
  • 37.35
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.71
  • 33.71
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.66
  • 31.66
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.64
  • 29.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Metazoa2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000061746.

Cross-references

EnsemblENSDARG00000061746 (arhgef9a)
ZFINZDB-GENE-070705-271 (arhgef9a)
EMBLCU137718
Uniprot/SPTREMBLE9QEP1, E9QEP1_DANRE, E9QHS5, E9QHS5_DANRE

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