D. rerio Gene: si:ch73-147f11.1 - ENSDARG00000061747 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061747
Namesi:ch73-147f11.1
Descriptionsi:ch73-147f11.1 [Source:ZFIN;Acc:ZDB-GENE-110411-223]
OrganismDanio rerio (zebrafish)
Synonym(s)cc058
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.42
  • 90.42
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.10e3
  • 9.10e3
  • 1.00e4
69.53
  • 69.53
  • 66.43
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.59
  • 63.59
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.47
  • 63.47
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.75
  • 62.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.59
  • 60.59
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.25e4
  • 1.25e4
  • 1.37e4
  • 1.45e4
  • 1.48e4
  • 2.23e4
58.27
  • 58.27
  • 54.23
  • 51.32
  • 50.31
  • 25.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.43e4
  • 1.43e4
  • 2.31e4
52.19
  • 52.19
  • 22.54
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.73
  • 51.73
AEIR
  • AEIR
CL:0000081blood cell
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004852cardiovascular system endothelium
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.01
  • 49.01
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.31
  • 44.31
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.19
  • 43.19
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.90
  • 42.90
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.79
  • 40.79
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.80e4
  • 1.80e4
39.86
  • 39.86
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
37.94
  • 37.94
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.00
  • 27.00
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.80
  • 23.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000061747 (si:ch73-147f11.1)
ZFINZDB-GENE-110411-223 (si:ch73-147f11.1)
EMBLCU929974
Uniprot/SPTREMBLF1QMY0, F1QMY0_DANRE, F8W3U2, F8W3U2_DANRE

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