Gene: col15a1b - ENSDARG00000061848 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000061848
Name	col15a1b
Description	collagen, type XV, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-689]
Organism	Danio rerio (zebrafish)
Synonym(s)	cb491, col15a1, mz98, sb:cb491, si:dkeyp-93c5.1, wu:fb50f05, wu:fc22d09

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000019	camera-type eye	[+] 4 stages ZFS:0000035Larval:Protruding-mouth ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15	1.38e3 1.38e3 9.96e3 1.10e4 1.36e4	95.40 95.40 66.66 63.32 54.53	AEIR AEIR AEIR AEIR AEIR
UBERON:0000948	heart	[+] 3 stages ZFS:0000035Larval:Protruding-mouth ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	2.30e3 2.30e3 1.45e4 1.71e4	92.31 92.31 51.47 42.86	AEIR AEIR AEIR AEIR
UBERON:0000966	retina	[+] 7 stages ZFS:0000032Pharyngula:High-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000037Larval:Day 5 ZFS:0000031Pharyngula:Prim-25 ZFS:0000033Hatching:Long-pec UBERON:0000066fully formed stage ZFS:0000035Larval:Protruding-mouth	2.99e3 2.99e3 5.85e3 5.98e3 8.42e3 8.70e3 1.26e4 1.29e4	90.00 90.00 80.42 79.97 71.80 70.86 57.77 56.65	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0003058	hypochord	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000028Segmentation:26+ somites ZFS:0000027Segmentation:20-25 somites	3.20e3 3.20e3 3.45e3 3.73e3	89.28 89.28 88.46 87.50	AEIR AEIR AEIR AEIR
ZFA:0000003	adaxial cell (Danio)	[+] 4 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites	3.73e3 3.73e3 6.64e3 7.03e3 7.47e3	87.50 87.50 77.77 76.46 74.99	AEIR AEIR AEIR AEIR AEIR
UBERON:0002240	spinal cord	[+] 4 stages ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	3.93e3 3.93e3 4.39e3 6.79e3 7.47e3	86.84 86.84 85.29 77.26 74.98	AEIR AEIR AEIR AEIR AEIR
UBERON:0001891	midbrain	[+] 7 stages ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	3.98e3 3.98e3 4.27e3 4.98e3 5.27e3 1.08e4 1.12e4 1.20e4	86.66 86.66 85.71 83.33 82.35 63.87 62.48 59.98	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001042	chordate pharynx	[+] 4 stages ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	4.48e3 4.48e3 4.98e3 8.04e3 8.04e3	84.99 84.99 83.33 73.07 73.07	AEIR AEIR AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	4.53e3 4.53e3	84.82 84.82	AEIR AEIR
UBERON:0004291	heart rudiment	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000028Segmentation:26+ somites ZFS:0000027Segmentation:20-25 somites	4.60e3 4.60e3 4.98e3 6.64e3	84.61 84.61 83.33 77.77	AEIR AEIR AEIR AEIR
UBERON:0002329	somite	[+] 6 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites	4.64e3 4.64e3 5.23e3 5.23e3 5.60e3 1.31e4 1.66e4	84.47 84.47 82.49 82.49 81.24 56.22 44.42	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	4.75e3 4.75e3 1.21e4	84.08 84.08 59.34	AEIR AEIR AEIR
UBERON:0001894	diencephalon	[+] 5 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec	4.98e3 4.98e3 1.17e4 1.22e4 1.23e4 1.25e4	83.33 83.33 60.84 59.06 58.80 58.31	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0003051	ear vesicle	[+] 7 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec ZFS:0000027Segmentation:20-25 somites ZFS:0000031Pharyngula:Prim-25 ZFS:0000029Pharyngula:Prim-5 ZFS:0000028Segmentation:26+ somites	5.23e3 5.23e3 5.23e3 5.50e3 5.85e3 6.79e3 6.98e3 7.12e3	82.49 82.49 82.49 81.57 80.42 77.26 76.65 76.18	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0004128	optic vesicle	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	5.27e3 5.27e3 5.27e3 5.27e3	82.35 82.35 82.35 82.35	AEIR AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 10 stages UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage ZFS:0000026Segmentation:14-19 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	5.49e3 5.49e3 6.20e3 6.54e3 6.80e3 6.87e3 7.61e3 7.83e3 8.78e3 1.00e4 1.21e4	81.61 81.61 79.25 78.10 77.22 76.99 74.53 73.79 70.59 66.52 59.36	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001893	telencephalon	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	5.50e3 5.50e3	81.57 81.57	AEIR AEIR
UBERON:0003069	otic placode	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	5.50e3 5.50e3	81.57 81.57	AEIR AEIR
UBERON:0000926	mesoderm	[+] 4 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites	5.60e3 5.60e3 1.10e4 1.10e4 1.10e4	81.24 81.24 63.32 63.32 63.32	AEIR AEIR AEIR AEIR AEIR
UBERON:0005498	primitive heart tube	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	5.75e3 5.75e3 5.75e3 6.97e3	80.76 80.76 80.76 76.66	AEIR AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	5.75e3 5.75e3	80.74 80.74	AEIR AEIR
UBERON:0002028	hindbrain	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	5.98e3 5.98e3	79.99 79.99	AEIR AEIR
UBERON:2001357	alar plate midbrain	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	5.98e3 5.98e3 6.29e3 6.29e3	79.99 79.99 78.94 78.94	AEIR AEIR AEIR AEIR
UBERON:0003079	floor plate	[+] 3 stages ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites	6.22e3 6.22e3 6.54e3 6.89e3	79.16 79.16 78.12 76.92	AEIR AEIR AEIR AEIR
UBERON:0001945	superior colliculus	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	6.29e3 6.29e3 6.29e3 6.40e3	78.94 78.94 78.94 78.56	AEIR AEIR AEIR AEIR
UBERON:0003055	periderm	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	6.64e3 6.64e3	77.77 77.77	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	7.45e3 7.45e3	75.07 75.07	AEIR AEIR
UBERON:0010170	region of neural crest	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	7.47e3 7.47e3	74.99 74.99	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	8.18e3 8.18e3	72.61 72.61	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 10 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000037Larval:Day 5 ZFS:0000024Segmentation:5-9 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000033Hatching:Long-pec ZFS:0000036Larval:Day 4 ZFS:0000040Larval:Days 14-20 ZFS:0000042Juvenile:Days 30-44 ZFS:0000022Gastrula:Bud	8.53e3 8.53e3 8.94e3 1.01e4 1.17e4 1.17e4 1.18e4 1.19e4 1.21e4 1.28e4 1.33e4	71.44 71.44 70.07 66.31 60.95 60.78 60.35 60.23 59.35 57.31 55.59	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0003065	ciliary marginal zone	[+] 3 stages ZFS:0000035Larval:Protruding-mouth ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec	8.53e3 8.53e3 9.96e3 1.19e4	71.43 71.43 66.67 60.00	AEIR AEIR AEIR AEIR
UBERON:0009620	tail bud paraxial mesoderm	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	8.75e3 8.75e3	70.70 70.70	AEIR AEIR
UBERON:0001049	neural tube	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	8.96e3 8.96e3	69.98 69.98	AEIR AEIR
UBERON:0009614	hindbrain neural plate	[+] 3 stages ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000023Segmentation:1-4 somites	9.19e3 9.19e3 9.19e3 9.60e3	69.22 69.22 69.22 67.85	AEIR AEIR AEIR AEIR
UBERON:0005886	post-hyoid pharyngeal arch skeleton	[+] 2 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	9.44e3 9.44e3 9.44e3	68.40 68.40 68.40	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	9.56e3 9.56e3	67.98 67.98	AEIR AEIR
UBERON:0002548	larva	[+] 3 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5 ZFS:0000035Larval:Protruding-mouth	9.74e3 9.74e3 1.03e4 1.04e4	67.38 67.38 65.58 65.12	AEIR AEIR AEIR AEIR
UBERON:0000203	pallium	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	9.96e3 9.96e3	66.67 66.67	AEIR AEIR
UBERON:0006222	future diencephalon	[+] 3 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000024Segmentation:5-9 somites	9.96e3 9.96e3 9.96e3 1.03e4	66.66 66.66 66.66 65.37	AEIR AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.03e4 1.03e4	65.41 65.41	AEIR AEIR
UBERON:0014371	future telencephalon	[+] 3 stages ZFS:0000025Segmentation:10-13 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000023Segmentation:1-4 somites	1.03e4 1.03e4 1.07e4 1.12e4	65.37 65.37 64.27 62.49	AEIR AEIR AEIR AEIR
UBERON:0001890	forebrain	[+] 4 stages ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25 ZFS:0000032Pharyngula:High-pec ZFS:0000030Pharyngula:Prim-15	1.10e4 1.10e4 1.15e4 1.17e4 1.26e4	63.32 63.32 61.53 60.70 57.68	AEIR AEIR AEIR AEIR AEIR
UBERON:0007812	post-anal tail	[+] 2 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15	1.12e4 1.12e4 1.49e4	62.50 62.50 50.00	AEIR AEIR AEIR
UBERON:0001264	pancreas	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec	1.12e4 1.12e4 1.16e4	62.49 62.49 61.10	AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud UBERON:0000109gastrula stage	1.17e4 1.17e4 1.75e4	60.67 60.67 41.42	AEIR AEIR AEIR
UBERON:0005515	rhombomere 5	[+] 2 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000029Pharyngula:Prim-5	1.24e4 1.24e4 1.49e4	58.33 58.33 49.99	AEIR AEIR AEIR
UBERON:0003052	midbrain-hindbrain boundary	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.28e4 1.28e4	57.12 57.12	AEIR AEIR
UBERON:0000955	brain	[+] 2 stages ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage	1.30e4 1.30e4 1.71e4	56.43 56.43 42.74	AEIR AEIR AEIR
UBERON:0001846	internal ear	[+] 3 stages ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000029Pharyngula:Prim-5	1.33e4 1.33e4 1.49e4 1.49e4	55.55 55.55 50.00 50.00	AEIR AEIR AEIR AEIR
UBERON:0001892	rhombomere	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	1.36e4 1.36e4 1.36e4 1.36e4	54.53 54.53 54.53 54.53	AEIR AEIR AEIR AEIR
UBERON:0003071	eye primordium	[+] 1 stage ZFS:0000023Segmentation:1-4 somites	1.39e4 1.39e4	53.55 53.55	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.43e4 1.43e4	52.01 52.01	AEIR AEIR
CL:0000710	neurecto-epithelial cell	[+] 1 stage ZFS:0000023Segmentation:1-4 somites	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0003118	pharyngeal arch artery 1	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4 1.49e4	50.00 50.00 50.00	AEIR AEIR AEIR
UBERON:0003120	pharyngeal arch artery 3	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4 1.49e4	50.00 50.00 50.00	AEIR AEIR AEIR
UBERON:0003121	pharyngeal arch artery 4	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4 1.49e4	50.00 50.00 50.00	AEIR AEIR AEIR
UBERON:0003122	pharyngeal arch artery 5	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0003123	pharyngeal arch artery 6	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:2000475	paraventricular organ	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000033Hatching:Long-pec	1.49e4 1.49e4 1.49e4 1.49e4	50.00 50.00 50.00 50.00	AEIR AEIR AEIR AEIR
UBERON:0000165	mouth	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.92 49.92	AEIR AEIR
UBERON:4000164	caudal fin	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000033Hatching:Long-pec	1.57e4 1.57e4 1.58e4	47.54 47.54 47.13	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	43.98 43.98	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.81e4 1.81e4	39.37 39.37	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	2.01e4 2.01e4	32.62 32.62	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Cross-references

Ensembl	ENSDARG00000061848 (col15a1b)
ZFIN	ZDB-GENE-070912-689 (col15a1b)
EMBL	BX511097, CR788285, CU467838
Uniprot/SPTREMBL	F1QM25, F1QM25_DANRE, F1QT12, F1QT12_DANRE