D. rerio Gene: ube3b - ENSDARG00000061960 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061960
Nameube3b
Descriptionubiquitin protein ligase E3B [Source:ZFIN;Acc:ZDB-GENE-060526-231]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-189p24.3
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.78e3
  • 3.78e3
87.34
  • 87.34
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
9.84e3
  • 9.84e3
  • 1.01e4
67.04
  • 67.04
  • 66.35
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.91e3
  • 9.91e3
  • 1.17e4
66.83
  • 66.83
  • 60.85
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.34
  • 63.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.25
  • 60.25
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.20e4
  • 1.20e4
  • 1.52e4
  • 1.54e4
  • 1.55e4
  • 1.57e4
59.75
  • 59.75
  • 49.17
  • 48.29
  • 48.20
  • 47.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.27e4
  • 1.27e4
57.64
  • 57.64
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.08
  • 57.08
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.60
  • 56.60
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.32e4
  • 1.32e4
  • 1.44e4
55.70
  • 55.70
  • 51.82
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.79
  • 54.79
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.62
  • 53.62
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.53
  • 53.53
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.48
  • 52.48
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.43e4
  • 1.43e4
  • 1.64e4
52.06
  • 52.06
  • 45.09
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
51.96
  • 51.96
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.93
  • 51.93
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.44
  • 51.44
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.54
  • 50.54
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.91
  • 49.91
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.35
  • 49.35
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.59e4
  • 1.59e4
  • 1.75e4
46.78
  • 46.78
  • 41.26
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.75
  • 46.75
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.59e4
  • 1.59e4
46.67
  • 46.67
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.35
  • 45.35
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.04
  • 41.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000061960.

Cross-references

EnsemblENSDARG00000061960 (ube3b)
ZFINZDB-GENE-060526-231 (ube3b)
EMBLBX510366
Uniprot/SPTREMBLA2BGM8, A2BGM8_DANRE

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